Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   KQ224_RS04840 Genome accession   NZ_CP076721
Coordinates   954372..954575 (-) Length   67 a.a.
NCBI ID   WP_216807161.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 954372..989989 954372..954575 within 0


Gene organization within MGE regions


Location: 954372..989989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS04840 (KQ224_04840) prx 954372..954575 (-) 204 WP_216807161.1 Paratox Regulator
  KQ224_RS04845 (KQ224_04845) - 954694..955533 (-) 840 WP_216807162.1 N-acetylmuramoyl-L-alanine amidase -
  KQ224_RS04850 (KQ224_04850) - 955639..955878 (-) 240 WP_216807163.1 phage holin -
  KQ224_RS04855 (KQ224_04855) - 955880..956254 (-) 375 WP_216807356.1 hypothetical protein -
  KQ224_RS04860 (KQ224_04860) - 956376..957797 (-) 1422 WP_216807164.1 hypothetical protein -
  KQ224_RS04865 (KQ224_04865) - 957797..958318 (-) 522 WP_216807165.1 hypothetical protein -
  KQ224_RS04870 (KQ224_04870) - 958318..958863 (-) 546 WP_216807166.1 hypothetical protein -
  KQ224_RS04875 (KQ224_04875) - 958876..960456 (-) 1581 WP_216807167.1 phage tail spike protein -
  KQ224_RS04880 (KQ224_04880) - 960459..961163 (-) 705 WP_216807168.1 phage tail domain-containing protein -
  KQ224_RS04885 (KQ224_04885) - 961163..963346 (-) 2184 WP_216807169.1 hypothetical protein -
  KQ224_RS04890 (KQ224_04890) - 963346..963582 (-) 237 WP_205713504.1 peptide methionine sulfoxide reductase -
  KQ224_RS04895 (KQ224_04895) - 963663..964079 (-) 417 WP_216807170.1 hypothetical protein -
  KQ224_RS04900 (KQ224_04900) - 964098..964688 (-) 591 WP_216807171.1 hypothetical protein -
  KQ224_RS04905 (KQ224_04905) - 964688..965056 (-) 369 WP_216807172.1 hypothetical protein -
  KQ224_RS04910 (KQ224_04910) - 965061..965489 (-) 429 WP_216807173.1 HK97-gp10 family putative phage morphogenesis protein -
  KQ224_RS04915 (KQ224_04915) - 965482..965802 (-) 321 WP_216807174.1 phage head closure protein -
  KQ224_RS04920 (KQ224_04920) - 965804..966334 (-) 531 WP_216807175.1 hypothetical protein -
  KQ224_RS04925 (KQ224_04925) - 966372..966524 (-) 153 WP_216807176.1 hypothetical protein -
  KQ224_RS04930 (KQ224_04930) - 966538..967449 (-) 912 WP_216807177.1 hypothetical protein -
  KQ224_RS04935 (KQ224_04935) - 967472..968062 (-) 591 WP_216807178.1 phage scaffolding protein -
  KQ224_RS04940 (KQ224_04940) - 968251..968448 (-) 198 WP_216807179.1 hypothetical protein -
  KQ224_RS04945 (KQ224_04945) - 968450..970168 (-) 1719 WP_216807180.1 phage minor head protein -
  KQ224_RS04950 (KQ224_04950) - 970143..971630 (-) 1488 WP_216807181.1 phage portal protein -
  KQ224_RS04955 (KQ224_04955) terL 971645..973039 (-) 1395 WP_216807182.1 phage terminase large subunit -
  KQ224_RS04960 (KQ224_04960) - 973029..973430 (-) 402 WP_253952870.1 hypothetical protein -
  KQ224_RS04965 (KQ224_04965) - 973472..973936 (-) 465 WP_216807183.1 hypothetical protein -
  KQ224_RS04970 (KQ224_04970) - 973940..974860 (-) 921 WP_216807184.1 hypothetical protein -
  KQ224_RS04985 (KQ224_04985) - 975152..975613 (-) 462 WP_216807185.1 DUF1492 domain-containing protein -
  KQ224_RS04990 (KQ224_04990) - 975693..975944 (-) 252 WP_216807186.1 hypothetical protein -
  KQ224_RS04995 (KQ224_04995) - 975934..976329 (-) 396 WP_216807187.1 hypothetical protein -
  KQ224_RS05000 (KQ224_05000) - 976331..976639 (-) 309 WP_216807188.1 DUF1372 family protein -
  KQ224_RS05005 (KQ224_05005) - 976626..976844 (-) 219 WP_216807189.1 hypothetical protein -
  KQ224_RS05010 (KQ224_05010) - 976831..977241 (-) 411 WP_216807190.1 RusA family crossover junction endodeoxyribonuclease -
  KQ224_RS05015 (KQ224_05015) - 977231..977464 (-) 234 WP_216807191.1 hypothetical protein -
  KQ224_RS05020 (KQ224_05020) - 977851..980115 (-) 2265 WP_216807192.1 AAA family ATPase -
  KQ224_RS05025 (KQ224_05025) - 980124..981707 (-) 1584 WP_216807193.1 DEAD/DEAH box helicase -
  KQ224_RS05030 (KQ224_05030) - 981717..982280 (-) 564 WP_216807194.1 hypothetical protein -
  KQ224_RS05035 (KQ224_05035) - 982352..983446 (-) 1095 WP_216807195.1 ATP-binding protein -
  KQ224_RS05040 (KQ224_05040) - 983446..984738 (-) 1293 WP_216807196.1 AAA family ATPase -
  KQ224_RS05045 (KQ224_05045) - 984748..985035 (-) 288 WP_216807197.1 hypothetical protein -
  KQ224_RS05050 (KQ224_05050) - 985040..985192 (-) 153 WP_216807198.1 hypothetical protein -
  KQ224_RS05055 (KQ224_05055) - 985182..985421 (-) 240 WP_216807199.1 hypothetical protein -
  KQ224_RS05060 (KQ224_05060) - 985462..985716 (-) 255 WP_216807200.1 hypothetical protein -
  KQ224_RS05065 (KQ224_05065) - 985877..986557 (+) 681 WP_216807201.1 DUF4145 domain-containing protein -
  KQ224_RS11645 - 986515..986640 (-) 126 WP_301553950.1 hypothetical protein -
  KQ224_RS05070 (KQ224_05070) - 986682..986873 (-) 192 WP_216807202.1 hypothetical protein -
  KQ224_RS05075 (KQ224_05075) - 987183..987542 (+) 360 WP_216807203.1 helix-turn-helix domain-containing protein -
  KQ224_RS05080 (KQ224_05080) - 987529..987912 (+) 384 WP_216807303.1 ImmA/IrrE family metallo-endopeptidase -
  KQ224_RS05085 (KQ224_05085) - 987923..988654 (+) 732 WP_216807204.1 hypothetical protein -
  KQ224_RS05090 (KQ224_05090) - 988832..989989 (+) 1158 WP_216807205.1 site-specific integrase -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7734.84 Da        Isoelectric Point: 4.3491

>NTDB_id=577573 KQ224_RS04840 WP_216807161.1 954372..954575(-) (prx) [Streptococcus parasuis strain H35]
MLEYEELKEAVNNGYIIGNKINIVRRGGKIFDYVLPGEEVRPWEIVSEENVADVMRELKRPCPEVGE

Nucleotide


Download         Length: 204 bp        

>NTDB_id=577573 KQ224_RS04840 WP_216807161.1 954372..954575(-) (prx) [Streptococcus parasuis strain H35]
ATGCTAGAATACGAAGAATTAAAAGAAGCGGTAAACAATGGGTATATAATAGGAAATAAAATTAATATCGTACGCCGAGG
TGGTAAGATATTTGATTACGTACTGCCTGGAGAAGAAGTTAGACCATGGGAGATTGTGAGCGAGGAGAATGTAGCGGATG
TGATGAGGGAATTAAAAAGACCTTGTCCAGAGGTCGGGGAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

58.333

89.552

0.522
  prx Streptococcus pyogenes MGAS315

55

89.552

0.493
  prx Streptococcus pyogenes MGAS8232

53.333

89.552

0.478
  prx Streptococcus pyogenes MGAS315

50

89.552

0.448
  prx Streptococcus pyogenes MGAS315

64.286

62.687

0.403
  prx Streptococcus pyogenes MGAS315

60.976

61.194

0.373