Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   KQ224_RS01595 Genome accession   NZ_CP076721
Coordinates   311299..311970 (-) Length   223 a.a.
NCBI ID   WP_024392086.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 306299..316970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS01570 (KQ224_01570) - 306692..307282 (-) 591 WP_171988423.1 class I SAM-dependent methyltransferase -
  KQ224_RS01575 (KQ224_01575) coaA 307358..308278 (+) 921 WP_171988422.1 type I pantothenate kinase -
  KQ224_RS01580 (KQ224_01580) rpsT 308337..308585 (+) 249 WP_216806854.1 30S ribosomal protein S20 -
  KQ224_RS01585 (KQ224_01585) - 308619..309845 (-) 1227 WP_253952839.1 transglutaminase domain-containing protein -
  KQ224_RS01590 (KQ224_01590) ciaH 309933..311306 (-) 1374 WP_216806855.1 cell wall metabolism sensor histidine kinase WalK Regulator
  KQ224_RS01595 (KQ224_01595) ciaR 311299..311970 (-) 672 WP_024392086.1 response regulator transcription factor Regulator
  KQ224_RS01600 (KQ224_01600) - 312067..312444 (-) 378 WP_216806856.1 hypothetical protein -
  KQ224_RS01605 (KQ224_01605) - 312699..313469 (-) 771 WP_216806857.1 glycosyltransferase -
  KQ224_RS01610 (KQ224_01610) - 313459..313815 (-) 357 WP_216806858.1 DUF2304 domain-containing protein -
  KQ224_RS01615 (KQ224_01615) - 313815..314531 (-) 717 WP_216806859.1 glycosyltransferase family 2 protein -
  KQ224_RS01620 (KQ224_01620) - 314548..315807 (-) 1260 WP_216806860.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25198.82 Da        Isoelectric Point: 4.2459

>NTDB_id=577561 KQ224_RS01595 WP_024392086.1 311299..311970(-) (ciaR) [Streptococcus parasuis strain H35]
MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGIYEAETGVYDLILLDLMLPEKDGFQVLKELREKGVSTPVLITTA
KEGLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTYGDVTVDLSTNTTTVNGQEVELLGKEFDLLVY
FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKVRKKLKGTAFGENLQTLRSVGYILKNV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=577561 KQ224_RS01595 WP_024392086.1 311299..311970(-) (ciaR) [Streptococcus parasuis strain H35]
ATGATTAAGATACTGTTGGTAGAAGACGATTTAAGCCTTTCTAATTCAGTCTTTGATTTTTTAGATGATTTTGCAGACGT
TATGCAAGTTTTTGATGGTGAAGAAGGTATTTACGAAGCGGAAACAGGGGTTTATGATTTAATTCTTTTAGATTTAATGT
TACCTGAGAAAGATGGTTTTCAAGTATTAAAAGAATTGCGTGAAAAAGGGGTCTCAACTCCCGTTCTGATTACGACAGCC
AAGGAAGGCCTAGAGGATAAAGGACATGGGTTTGAATTGGGTGCAGATGACTATCTCACAAAACCATTCTATTTAGAAGA
ACTCAAAATGCGTATTCAAGCCTTGTTAAAACGAGCAGGGAAGTTCAATGAAAATACTCTAACATACGGAGATGTTACTG
TCGACTTATCTACAAATACTACGACAGTCAATGGTCAAGAAGTAGAATTGTTAGGGAAAGAGTTCGACTTGTTGGTATAT
TTCTTACAGAACCAGAATGTGATTTTACCTAAAACACAGATTTTTGATCGTATTTGGGGATTTGATAGTGATACAACCAT
TTCAGTTGTTGAGGTTTACGTATCGAAAGTAAGGAAAAAATTGAAAGGAACCGCATTTGGAGAAAATCTTCAAACTCTTC
GTAGTGTCGGTTACATTTTGAAAAATGTCTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

89.238

100

0.892
  ciaR Streptococcus pneumoniae Rx1

88.789

100

0.888
  ciaR Streptococcus pneumoniae D39

88.789

100

0.888
  ciaR Streptococcus pneumoniae R6

88.789

100

0.888
  ciaR Streptococcus pneumoniae TIGR4

88.789

100

0.888
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.611

100

0.381
  vicR Streptococcus mutans UA159

35.043

100

0.368