Detailed information NTG0057639

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LEUCM_RS00645
• Genome accession: NZ_AP017929
• Coordinates: 107281..108288 (-)
• Length: 335 a.a.
• NCBI ID: WP_016264643.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 102281..113288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEUCM_RS00625 (LACBS_00102)	argF	103203..104219 (-)	1017	WP_011374080.1	ornithine carbamoyltransferase	-
LEUCM_RS00630 (LACBS_00103)	arcA	104245..105480 (-)	1236	WP_016264645.1	arginine deiminase	-
LEUCM_RS00635 (LACBS_00105)	-	105687..106208 (-)	522	WP_016264644.1	GNAT family N-acetyltransferase	-
LEUCM_RS00640 (LACBS_00106)	queA	106235..107266 (-)	1032	WP_011374077.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LEUCM_RS00645 (LACBS_00107)	ruvB	107281..108288 (-)	1008	WP_016264643.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LEUCM_RS00650 (LACBS_00108)	ruvA	108301..108912 (-)	612	WP_056936468.1	Holliday junction branch migration protein RuvA	Machinery gene
LEUCM_RS00655 (LACBS_00109)	-	109163..109726 (-)	564	WP_016264641.1	TIGR00730 family Rossman fold protein	-
LEUCM_RS00660 (LACBS_00110)	-	109739..110284 (-)	546	WP_016264640.1	nucleoside triphosphate pyrophosphatase	-
LEUCM_RS00665 (LACBS_00111)	hexB	110284..112242 (-)	1959	WP_025016298.1	DNA mismatch repair endonuclease MutL	Machinery gene

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37247.68 Da
• Isoelectric Point: 4.8413

>NTDB_id=57639 LEUCM_RS00645 WP_016264643.1 107281..108288(-) (ruvB) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MADERIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPPGLGKTTLAMVIANELQ
VQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPKMVEELLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGA
TTRAGLLSAPLRDRFGIVEHMAYYTEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQN
TIDQAIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEVYEPYLLQIGFLKRTQRGRLV
TPAGYAHLGMPYPEK

Nucleotide

• Length: 1008 bp

>NTDB_id=57639 LEUCM_RS00645 WP_016264643.1 107281..108288(-) (ruvB) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGGCAGATGAGCGAATTGTTTCAGCCGAAAACGATGATTTTGCTGAAGCAAGCATTGAAAAAACATTGCGGCCACAAGT
CCTTGCACAATATATCGGTCAAGATCGGGTTAAAAATGAATTAGCGGTCTATATTGAAGCGGCCAAAAAACGGGAAGAGT
CCCTCGATCACGTTTTACTTTATGGCCCACCAGGTTTGGGGAAAACCACGTTAGCGATGGTGATTGCCAACGAGTTGCAA
GTCCAGATTCGAACGACGAGTGGTCCTGCAATTGAGCGGCCTGGGGATTTAGTGGCGTTATTAAACGAGTTACAACCTGG
GGATGTTTTATTTATTGATGAAATTCATCGCTTACCTAAGATGGTTGAAGAATTACTTTATTCAGCGATGGAAGATTTCT
ACATCGATATTGTGGTTGGTCAAGGGCCCACCGCACATCCCGTCCATTTTCCATTACCACCGTTCACATTGATTGGCGCG
ACGACGCGGGCGGGCTTATTGTCTGCGCCATTGCGAGATCGTTTCGGGATTGTGGAACACATGGCTTATTACACGGAGGC
TGATTTGATGGACATTGTGCAACGCTCAGCCGGCGTCTTTAATATGTCGATTGTGCCAGATGGTGCGTTAGAAATCGCAC
GTCGCTCGCGAGGGACGCCGCGGATTGCCAATCGGTTGTTGAAACGAACTCGAGATTACGCACAAGTGGCTGACCAAAAT
ACGATTGATCAGGCGATTGCTGATCACGCATTAAGTCAGCTGCAAGTTGATATTCGGGGCTTAGACGGTGTCGATCGCAA
AATCCTCCAGATGATGATTGATTATTATCAAGGCGGACCAGTCGGTTTAAAAACCATTGCCGCCAATATTGGTGAAGAAA
ACGAAACAATTGAAGAAGTTTACGAGCCTTATTTACTGCAAATTGGCTTTTTAAAACGAACGCAAAGAGGCCGGCTGGTA
ACGCCGGCTGGTTATGCCCATTTAGGCATGCCTTATCCAGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (260-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	64.653	98.806	0.639
ruvB	Streptococcus pneumoniae R6	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae D39	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae TIGR4	64.375	95.522	0.615
ruvB	Synechocystis sp. PCC 6803	58.28	93.731	0.546
ruvB	Helicobacter pylori 26695	51.829	97.91	0.507