Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LEUCM_RS00650 Genome accession   NZ_AP017929
Coordinates   108301..108912 (-) Length   203 a.a.
NCBI ID   WP_056936468.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103301..113912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS00630 (LACBS_00103) arcA 104245..105480 (-) 1236 WP_016264645.1 arginine deiminase -
  LEUCM_RS00635 (LACBS_00105) - 105687..106208 (-) 522 WP_016264644.1 GNAT family N-acetyltransferase -
  LEUCM_RS00640 (LACBS_00106) queA 106235..107266 (-) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LEUCM_RS00645 (LACBS_00107) ruvB 107281..108288 (-) 1008 WP_016264643.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LEUCM_RS00650 (LACBS_00108) ruvA 108301..108912 (-) 612 WP_056936468.1 Holliday junction branch migration protein RuvA Machinery gene
  LEUCM_RS00655 (LACBS_00109) - 109163..109726 (-) 564 WP_016264641.1 TIGR00730 family Rossman fold protein -
  LEUCM_RS00660 (LACBS_00110) - 109739..110284 (-) 546 WP_016264640.1 nucleoside triphosphate pyrophosphatase -
  LEUCM_RS00665 (LACBS_00111) hexB 110284..112242 (-) 1959 WP_025016298.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22159.35 Da        Isoelectric Point: 4.8129

>NTDB_id=57640 LEUCM_RS00650 WP_056936468.1 108301..108912(-) (ruvA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIYVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=57640 LEUCM_RS00650 WP_056936468.1 108301..108912(-) (ruvA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTACAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTATGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGTTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAAAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTCGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(157-201)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.78

100

0.493
  ruvA Streptococcus pneumoniae R6

48.78

100

0.493
  ruvA Streptococcus pneumoniae D39

48.78

100

0.493
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463