Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KI818_RS07985 Genome accession   NZ_CP075562
Coordinates   1566638..1567108 (-) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain Sta2021010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1561638..1572108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI818_RS07925 (KI818_07880) - 1562331..1562675 (-) 345 WP_000402904.1 hypothetical protein -
  KI818_RS07930 (KI818_07885) - 1562806..1563105 (-) 300 WP_000988332.1 HNH endonuclease -
  KI818_RS07935 (KI818_07890) - 1563337..1563753 (-) 417 WP_070958032.1 transcriptional regulator -
  KI818_RS07940 (KI818_07895) - 1563781..1563981 (-) 201 WP_001813913.1 DUF1514 family protein -
  KI818_RS07945 (KI818_07900) rinB 1563981..1564130 (-) 150 WP_000595265.1 transcriptional activator RinB -
  KI818_RS07950 (KI818_07905) - 1564127..1564333 (-) 207 WP_000195810.1 DUF1381 domain-containing protein -
  KI818_RS07955 (KI818_07910) - 1564370..1564459 (-) 90 Protein_1543 dUTPase -
  KI818_RS07960 (KI818_07915) - 1564426..1564692 (-) 267 WP_234494716.1 SAV1978 family virulence-associated passenger protein -
  KI818_RS07965 (KI818_07920) - 1564696..1565064 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  KI818_RS07970 (KI818_07925) - 1565077..1565481 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  KI818_RS07975 (KI818_07930) - 1565490..1565708 (-) 219 WP_000338530.1 hypothetical protein -
  KI818_RS07980 (KI818_07935) - 1565715..1566608 (-) 894 WP_000148321.1 DnaD domain-containing protein -
  KI818_RS07985 (KI818_07940) ssbA 1566638..1567108 (-) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  KI818_RS07990 (KI818_07945) - 1567109..1567726 (-) 618 WP_064135358.1 MBL fold metallo-hydrolase -
  KI818_RS07995 (KI818_07950) - 1567807..1568727 (-) 921 WP_255777520.1 recombinase RecT -
  KI818_RS08000 (KI818_07955) - 1568729..1570672 (-) 1944 WP_000700555.1 AAA family ATPase -
  KI818_RS08005 (KI818_07960) - 1570681..1570944 (-) 264 WP_001205732.1 hypothetical protein -
  KI818_RS08010 (KI818_07965) - 1570953..1571213 (-) 261 WP_000291488.1 DUF1108 family protein -
  KI818_RS08015 (KI818_07970) - 1571306..1571467 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  KI818_RS08020 (KI818_07975) - 1571464..1571784 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=569616 KI818_RS07985 WP_000934760.1 1566638..1567108(-) (ssbA) [Staphylococcus aureus strain Sta2021010]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=569616 KI818_RS07985 WP_000934760.1 1566638..1567108(-) (ssbA) [Staphylococcus aureus strain Sta2021010]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365