Detailed information NTG0569579

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: KIW23_RS10435
• Genome accession: NZ_CP075561
• Coordinates: 2120734..2121777 (-)
• Length: 347 a.a.
• NCBI ID: WP_251314860.1
• Uniprot ID: -
• Organism: Floricoccus penangensis strain ML061-4
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2115734..2126777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIW23_RS10395 (KIW23_10410)	-	2116436..2117143 (-)	708	WP_251314853.1	metal ABC transporter ATP-binding protein	-
KIW23_RS10400 (KIW23_10415)	-	2117144..2118079 (-)	936	WP_251314854.1	metal ABC transporter substrate-binding protein	-
KIW23_RS10405 (KIW23_10420)	ispE	2118158..2119006 (-)	849	WP_251314855.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
KIW23_RS10410 (KIW23_10425)	comGG	2119032..2119340 (-)	309	WP_251314856.1	competence type IV pilus minor pilin ComGG	-
KIW23_RS10415 (KIW23_10430)	comGF	2119340..2119777 (-)	438	WP_251314857.1	competence type IV pilus minor pilin ComGF	-
KIW23_RS10420 (KIW23_10435)	comGE	2119764..2120057 (-)	294	WP_251314858.1	competence type IV pilus minor pilin ComGE	-
KIW23_RS10425 (KIW23_10440)	comGD	2120029..2120463 (-)	435	WP_083312879.1	competence type IV pilus minor pilin ComGD	-
KIW23_RS10430 (KIW23_10445)	comYC	2120423..2120737 (-)	315	WP_070787377.1	competence type IV pilus major pilin ComGC	Machinery gene
KIW23_RS10435 (KIW23_10450)	comYB	2120734..2121777 (-)	1044	WP_251314860.1	competence type IV pilus assembly protein ComGB	Machinery gene
KIW23_RS10440 (KIW23_10455)	comGA/cglA/cilD	2121701..2122639 (-)	939	WP_251314861.1	competence type IV pilus ATPase ComGA	Machinery gene
KIW23_RS10445 (KIW23_10460)	-	2122728..2123120 (-)	393	WP_233278814.1	DUF1033 family protein	-
KIW23_RS10450 (KIW23_10465)	-	2123203..2123643 (-)	441	WP_251314862.1	CoA-binding protein	-
KIW23_RS10455 (KIW23_10470)	polA	2123845..2126469 (-)	2625	WP_251314863.1	DNA polymerase I	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 40519.91 Da
• Isoelectric Point: 9.4547

>NTDB_id=569579 KIW23_RS10435 WP_251314860.1 2120734..2121777(-) (comYB) [Floricoccus penangensis strain ML061-4]
MNNLKNYLQMDISLMMRKNPKKLSLKKQVKLIQLMNNLFSSGFSLTEIVNFLSKSGLVEQGFTQVMHKDLTEGKNLSEIL
DHLGFSKNVVTQVTLADYHGNIEQSLNLIEINLRKILDVRKKIIQVATYPVILVFFLIAIMVGLNKYLFEQNDSENYASF
FVRNLPQIFFIGSVFISIVIICIFLYFKRKKSINNYQIIMKIPFISSIVQTYLTAYYAREWGNLIGQGIEMNSIVSLMQS
QKNKLFSELGFEFSKRMEKGQEFSKQVESYSFFKRELALIIEYGEMKSKLGKELEIYSDECWNEFFIKIDRYLQLIQPVI
FLFVALMIIMIYAAMLLPIYQNMEGFI

Nucleotide

• Length: 1044 bp

>NTDB_id=569579 KIW23_RS10435 WP_251314860.1 2120734..2121777(-) (comYB) [Floricoccus penangensis strain ML061-4]
ATGAACAACTTGAAAAATTATTTGCAGATGGACATATCTCTCATGATGAGAAAGAATCCGAAAAAATTATCACTTAAAAA
ACAAGTGAAGCTTATTCAACTCATGAATAATTTATTCTCAAGTGGATTCTCATTAACTGAAATTGTTAATTTCCTATCAA
AAAGCGGACTAGTAGAGCAGGGATTTACACAAGTAATGCATAAAGACTTGACGGAAGGGAAAAATTTGTCAGAAATATTG
GATCATTTAGGTTTTTCTAAAAATGTTGTAACTCAGGTTACACTTGCTGATTATCATGGAAATATTGAACAATCATTAAA
TTTGATAGAAATAAATTTGAGAAAGATACTTGATGTTAGAAAGAAAATAATTCAAGTTGCTACATATCCAGTAATTCTTG
TTTTTTTCTTAATAGCTATTATGGTGGGACTTAACAAATATTTATTTGAACAAAATGACTCTGAGAATTATGCAAGTTTT
TTCGTAAGGAACTTACCACAAATATTTTTTATTGGATCTGTATTTATAAGTATTGTAATAATATGTATATTTCTATATTT
CAAGAGAAAAAAATCAATTAATAACTATCAAATAATAATGAAAATCCCTTTTATTTCTTCAATTGTGCAAACATATTTGA
CCGCATATTACGCGCGTGAATGGGGAAATTTAATTGGACAAGGAATTGAAATGAATAGTATTGTAAGTTTAATGCAGAGC
CAAAAAAATAAACTTTTTTCTGAACTTGGATTTGAATTTTCAAAGAGAATGGAAAAAGGTCAGGAATTTAGCAAACAAGT
TGAATCATATTCTTTTTTCAAAAGAGAATTAGCACTTATTATCGAATATGGAGAGATGAAATCGAAACTTGGTAAGGAGC
TAGAGATTTATTCAGATGAGTGCTGGAATGAATTTTTTATAAAAATAGATAGGTATCTTCAACTTATACAACCTGTAATT
TTTCTTTTTGTAGCACTTATGATAATTATGATTTATGCGGCTATGTTGCTGCCAATTTACCAAAATATGGAGGGATTTAT
ATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (32-144)

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	51.765	97.983	0.507
comYB	Streptococcus mutans UA159	51.765	97.983	0.507
comGB	Lactococcus lactis subsp. cremoris KW2	50.888	97.406	0.496
comYB	Streptococcus gordonii str. Challis substr. CH1	50.442	97.695	0.493
comGB/cglB	Streptococcus mitis SK321	49.555	97.118	0.481
comGB/cglB	Streptococcus mitis NCTC 12261	49.552	96.542	0.478
comGB/cglB	Streptococcus pneumoniae Rx1	48.665	97.118	0.473
comGB/cglB	Streptococcus pneumoniae D39	48.665	97.118	0.473
comGB/cglB	Streptococcus pneumoniae R6	48.665	97.118	0.473
comGB/cglB	Streptococcus pneumoniae TIGR4	48.665	97.118	0.473