Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | KI615_RS20355 | Genome accession | NZ_CP075186 |
| Coordinates | 4302390..4302680 (-) | Length | 96 a.a. |
| NCBI ID | WP_226471832.1 | Uniprot ID | - |
| Organism | Dechloromonas denitrificans strain G6 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4297390..4307680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI615_RS20325 (KI615_20270) | pilU | 4297777..4298913 (-) | 1137 | WP_319002314.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| KI615_RS20330 (KI615_20275) | pilT | 4298947..4299990 (-) | 1044 | WP_226417522.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KI615_RS20335 (KI615_20280) | - | 4300047..4300736 (+) | 690 | WP_226471828.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| KI615_RS20340 (KI615_20285) | proC | 4300733..4301545 (+) | 813 | WP_226471829.1 | pyrroline-5-carboxylate reductase | - |
| KI615_RS20345 (KI615_20290) | - | 4301545..4302078 (+) | 534 | WP_226471830.1 | YggT family protein | - |
| KI615_RS20350 (KI615_20295) | - | 4302075..4302368 (+) | 294 | WP_226471831.1 | DUF167 domain-containing protein | - |
| KI615_RS20355 (KI615_20300) | comE | 4302390..4302680 (-) | 291 | WP_226471832.1 | ComEA family DNA-binding protein | Machinery gene |
| KI615_RS20360 (KI615_20305) | - | 4302807..4304054 (-) | 1248 | WP_226471833.1 | dihydroorotase | - |
| KI615_RS20365 (KI615_20310) | - | 4304056..4305015 (-) | 960 | WP_226471834.1 | aspartate carbamoyltransferase catalytic subunit | - |
| KI615_RS20370 (KI615_20315) | pyrR | 4305008..4305517 (-) | 510 | WP_226471835.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
| KI615_RS20375 (KI615_20320) | ruvX | 4305501..4305935 (-) | 435 | WP_226471836.1 | Holliday junction resolvase RuvX | - |
| KI615_RS20380 (KI615_20325) | - | 4305928..4306488 (-) | 561 | WP_226471837.1 | YqgE/AlgH family protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10048.72 Da Isoelectric Point: 10.3828
>NTDB_id=568469 KI615_RS20355 WP_226471832.1 4302390..4302680(-) (comE) [Dechloromonas denitrificans strain G6]
MQRILSVILMFFAGIGFALAAVNINTATVDELDSVKGIGPGKAKAIVDYRSKNGPFKSVDDLKEVKGFGEKSVAKLRGEL
TASESPAPAAKPAAKK
MQRILSVILMFFAGIGFALAAVNINTATVDELDSVKGIGPGKAKAIVDYRSKNGPFKSVDDLKEVKGFGEKSVAKLRGEL
TASESPAPAAKPAAKK
Nucleotide
Download Length: 291 bp
>NTDB_id=568469 KI615_RS20355 WP_226471832.1 4302390..4302680(-) (comE) [Dechloromonas denitrificans strain G6]
ATGCAACGTATCCTGTCTGTGATCCTGATGTTTTTTGCCGGTATTGGCTTTGCCCTGGCCGCCGTCAATATCAATACCGC
CACCGTCGATGAGCTGGATTCGGTGAAAGGCATCGGCCCTGGCAAAGCCAAGGCGATTGTCGACTACCGCAGCAAGAACG
GACCGTTCAAGTCGGTCGACGACTTGAAGGAGGTTAAGGGTTTTGGCGAAAAGAGCGTTGCCAAGCTGCGCGGTGAATTG
ACGGCATCCGAGTCGCCGGCGCCTGCCGCCAAACCAGCGGCCAAGAAATAA
ATGCAACGTATCCTGTCTGTGATCCTGATGTTTTTTGCCGGTATTGGCTTTGCCCTGGCCGCCGTCAATATCAATACCGC
CACCGTCGATGAGCTGGATTCGGTGAAAGGCATCGGCCCTGGCAAAGCCAAGGCGATTGTCGACTACCGCAGCAAGAACG
GACCGTTCAAGTCGGTCGACGACTTGAAGGAGGTTAAGGGTTTTGGCGAAAAGAGCGTTGCCAAGCTGCGCGGTGAATTG
ACGGCATCCGAGTCGCCGGCGCCTGCCGCCAAACCAGCGGCCAAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
48 |
100 |
0.5 |
| comE | Neisseria gonorrhoeae MS11 |
48 |
100 |
0.5 |
| comE | Neisseria gonorrhoeae MS11 |
48 |
100 |
0.5 |
| comE | Neisseria gonorrhoeae MS11 |
48 |
100 |
0.5 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
52 |
78.125 |
0.406 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
42.529 |
90.625 |
0.385 |