Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | KI611_RS20660 | Genome accession | NZ_CP075185 |
| Coordinates | 4344240..4344530 (-) | Length | 96 a.a. |
| NCBI ID | WP_226417527.1 | Uniprot ID | - |
| Organism | Dechloromonas denitrificans strain 110 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4339240..4349530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI611_RS20630 (KI611_20585) | pilU | 4339627..4340763 (-) | 1137 | WP_319002314.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| KI611_RS20635 (KI611_20590) | pilT | 4340797..4341840 (-) | 1044 | WP_226417522.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KI611_RS20640 (KI611_20595) | - | 4341897..4342586 (+) | 690 | WP_226417523.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| KI611_RS20645 (KI611_20600) | proC | 4342583..4343395 (+) | 813 | WP_226417524.1 | pyrroline-5-carboxylate reductase | - |
| KI611_RS20650 (KI611_20605) | - | 4343395..4343928 (+) | 534 | WP_226417525.1 | YggT family protein | - |
| KI611_RS20655 (KI611_20610) | - | 4343925..4344218 (+) | 294 | WP_226417526.1 | DUF167 domain-containing protein | - |
| KI611_RS20660 (KI611_20615) | comE | 4344240..4344530 (-) | 291 | WP_226417527.1 | ComEA family DNA-binding protein | Machinery gene |
| KI611_RS20665 (KI611_20620) | - | 4344657..4345904 (-) | 1248 | WP_226417528.1 | dihydroorotase | - |
| KI611_RS20670 (KI611_20625) | - | 4345906..4346865 (-) | 960 | WP_226417529.1 | aspartate carbamoyltransferase catalytic subunit | - |
| KI611_RS20675 (KI611_20630) | pyrR | 4346858..4347367 (-) | 510 | WP_226417530.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
| KI611_RS20680 (KI611_20635) | ruvX | 4347351..4347785 (-) | 435 | WP_226417531.1 | Holliday junction resolvase RuvX | - |
| KI611_RS20685 (KI611_20640) | - | 4347778..4348338 (-) | 561 | WP_226417532.1 | YqgE/AlgH family protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10068.71 Da Isoelectric Point: 10.3828
>NTDB_id=568446 KI611_RS20660 WP_226417527.1 4344240..4344530(-) (comE) [Dechloromonas denitrificans strain 110]
MQRILSVILMFFAGIGFALAAVNINTATVDELDSVKGIGPGKAKAIVDYRSKNGPFKSVDDLKEVKGFGEKSVAKLRSEL
TASESSAPAAKPAAKK
MQRILSVILMFFAGIGFALAAVNINTATVDELDSVKGIGPGKAKAIVDYRSKNGPFKSVDDLKEVKGFGEKSVAKLRSEL
TASESSAPAAKPAAKK
Nucleotide
Download Length: 291 bp
>NTDB_id=568446 KI611_RS20660 WP_226417527.1 4344240..4344530(-) (comE) [Dechloromonas denitrificans strain 110]
ATGCAACGTATCCTGTCTGTGATCCTGATGTTTTTTGCCGGTATTGGCTTTGCCCTGGCCGCCGTCAATATCAATACCGC
CACCGTCGATGAGCTGGATTCGGTGAAAGGCATCGGCCCTGGCAAGGCCAAGGCGATTGTCGACTACCGCAGCAAGAACG
GACCGTTCAAGTCGGTCGATGACTTGAAGGAGGTCAAGGGCTTTGGTGAGAAGAGTGTTGCCAAGCTGCGCAGCGAACTG
ACCGCATCGGAATCGTCGGCCCCTGCCGCCAAACCAGCGGCCAAGAAATAA
ATGCAACGTATCCTGTCTGTGATCCTGATGTTTTTTGCCGGTATTGGCTTTGCCCTGGCCGCCGTCAATATCAATACCGC
CACCGTCGATGAGCTGGATTCGGTGAAAGGCATCGGCCCTGGCAAGGCCAAGGCGATTGTCGACTACCGCAGCAAGAACG
GACCGTTCAAGTCGGTCGATGACTTGAAGGAGGTCAAGGGCTTTGGTGAGAAGAGTGTTGCCAAGCTGCGCAGCGAACTG
ACCGCATCGGAATCGTCGGCCCCTGCCGCCAAACCAGCGGCCAAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
49.474 |
98.958 |
0.49 |
| comE | Neisseria gonorrhoeae MS11 |
49.474 |
98.958 |
0.49 |
| comE | Neisseria gonorrhoeae MS11 |
49.474 |
98.958 |
0.49 |
| comE | Neisseria gonorrhoeae MS11 |
49.474 |
98.958 |
0.49 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
52 |
78.125 |
0.406 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
42.529 |
90.625 |
0.385 |
| comEA | Staphylococcus aureus MW2 |
58.333 |
62.5 |
0.365 |
| comEA | Staphylococcus aureus N315 |
58.333 |
62.5 |
0.365 |