Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KIK02_RS20950 Genome accession   NZ_CP075171
Coordinates   4505649..4506014 (-) Length   121 a.a.
NCBI ID   WP_233744462.1    Uniprot ID   -
Organism   Leptodesmis sichuanensis A121     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4500649..4511014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK02_RS20940 (KIK02_21090) - 4502092..4504950 (-) 2859 WP_233744460.1 methyl-accepting chemotaxis protein -
  KIK02_RS20945 (KIK02_21095) - 4505106..4505636 (-) 531 WP_233744461.1 chemotaxis protein CheW -
  KIK02_RS20950 (KIK02_21100) pilH 4505649..4506014 (-) 366 WP_233744462.1 response regulator transcription factor Machinery gene
  KIK02_RS20955 (KIK02_21105) - 4506106..4507407 (-) 1302 WP_233744463.1 response regulator -
  KIK02_RS20960 (KIK02_21110) hmpF 4507830..4509584 (+) 1755 WP_233744464.1 pilus motility taxis protein HmpF -
  KIK02_RS20965 (KIK02_21115) tilS 4509570..4510553 (-) 984 WP_233744465.1 tRNA lysidine(34) synthetase TilS -
  KIK02_RS20970 (KIK02_21120) - 4510553..4510978 (-) 426 WP_233744466.1 KGK domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13430.53 Da        Isoelectric Point: 5.1949

>NTDB_id=568216 KIK02_RS20950 WP_233744462.1 4505649..4506014(-) (pilH) [Leptodesmis sichuanensis A121]
MSTVLVVEDSVTQREMIKDLLKGSGLTVTVASDGVEALEQIQGNRPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMRQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=568216 KIK02_RS20950 WP_233744462.1 4505649..4506014(-) (pilH) [Leptodesmis sichuanensis A121]
ATGAGTACAGTTCTGGTTGTGGAAGACAGTGTCACCCAACGGGAAATGATTAAGGATCTCCTCAAAGGCAGCGGTTTAAC
AGTGACCGTGGCGAGTGATGGAGTAGAGGCCCTGGAACAGATTCAAGGCAACCGTCCTGATTTAGTGGTTCTAGATATTG
TCATGCCCCGAATGAACGGGTACGAAGTTTGCCGTCGCCTTAAATCTGATCCCAAGACCCAGAATGTACCCGTTGTCATG
TGTTCTTCCAAGGGTGAAGAATTTGATCGTTACTGGGGGATGCGACAGGGGGCGGACGCTTACATTGCCAAGCCATTTCA
GCCCACTGAACTGGTTGGCACCGTGAAACAACTGTTGAGAGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

78.512

100

0.785
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  chpA Acinetobacter baumannii strain A118

39.655

95.868

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372