Detailed information NTG0567997

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: MK801_RS00265
• Genome accession: NZ_CP092748
• Coordinates: 52189..53190 (+)
• Length: 333 a.a.
• NCBI ID: WP_057720756.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain 17M1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47189..58190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MK801_RS00250 (MK801_00250)	-	48598..49257 (+)	660	WP_254255581.1	hypothetical protein	-
MK801_RS00255 (MK801_00255)	hexB	49386..51356 (+)	1971	WP_057720779.1	DNA mismatch repair endonuclease MutL	Machinery gene
MK801_RS00260 (MK801_00260)	ruvA	51469..52062 (+)	594	WP_003131995.1	Holliday junction branch migration protein RuvA	Machinery gene
MK801_RS00265 (MK801_00265)	ruvB	52189..53190 (+)	1002	WP_057720756.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
MK801_RS00270 (MK801_00270)	-	53326..54210 (+)	885	WP_057720755.1	XRE/MutR family transcriptional regulator	-
MK801_RS00275 (MK801_00275)	-	54430..54999 (+)	570	WP_012898697.1	hypothetical protein	-
MK801_RS00280 (MK801_00280)	-	55304..56422 (+)	1119	WP_240664873.1	ABC transporter permease	-
MK801_RS00285 (MK801_00285)	-	56419..57036 (+)	618	WP_021723261.1	AAA family ATPase	-
MK801_RS00290 (MK801_00290)	-	57141..57305 (+)	165	WP_003131988.1	hypothetical protein	-
MK801_RS00295 (MK801_00295)	-	57449..57886 (+)	438	WP_254255582.1	low molecular weight protein-tyrosine-phosphatase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37663.20 Da
• Isoelectric Point: 4.5825

>NTDB_id=567997 MK801_RS00265 WP_057720756.1 52189..53190(+) (ruvB) [Lactococcus lactis strain 17M1]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDTAGLDYIDQKILRTMIEMYHGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=567997 MK801_RS00265 WP_057720756.1 52189..53190(+) (ruvB) [Lactococcus lactis strain 17M1]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
ATATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGACC
ACGTACTACTTTTTGGTCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGAGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGTGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGGATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTAGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCGCGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATACCGCTGGTTTGGATTATATTGACCAAAAAATTCTCCG
CACAATGATTGAAATGTACCACGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACCTAGGTTATGTTTACAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae D39	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae TIGR4	78.313	99.7	0.781
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.491	96.697	0.595
ruvB	Helicobacter pylori 26695	51.242	96.697	0.495
ruvB	Synechocystis sp. PCC 6803	51.613	93.093	0.48