Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MK801_RS00260 Genome accession   NZ_CP092748
Coordinates   51469..52062 (+) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis strain 17M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 46469..57062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS00250 (MK801_00250) - 48598..49257 (+) 660 WP_254255581.1 hypothetical protein -
  MK801_RS00255 (MK801_00255) hexB 49386..51356 (+) 1971 WP_057720779.1 DNA mismatch repair endonuclease MutL Machinery gene
  MK801_RS00260 (MK801_00260) ruvA 51469..52062 (+) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  MK801_RS00265 (MK801_00265) ruvB 52189..53190 (+) 1002 WP_057720756.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MK801_RS00270 (MK801_00270) - 53326..54210 (+) 885 WP_057720755.1 XRE/MutR family transcriptional regulator -
  MK801_RS00275 (MK801_00275) - 54430..54999 (+) 570 WP_012898697.1 hypothetical protein -
  MK801_RS00280 (MK801_00280) - 55304..56422 (+) 1119 WP_240664873.1 ABC transporter permease -
  MK801_RS00285 (MK801_00285) - 56419..57036 (+) 618 WP_021723261.1 AAA family ATPase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=567996 MK801_RS00260 WP_003131995.1 51469..52062(+) (ruvA) [Lactococcus lactis strain 17M1]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=567996 MK801_RS00260 WP_003131995.1 51469..52062(+) (ruvA) [Lactococcus lactis strain 17M1]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGCTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGTG
AAGATGCCCACAGTCTCTATGGTTTTGTTAACGAAGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTCCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTACAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGCCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462