Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KDJ56_RS21920 Genome accession   NZ_CP073708
Coordinates   4426235..4426693 (-) Length   152 a.a.
NCBI ID   WP_198828018.1    Uniprot ID   A0A7T5EKS0
Organism   Brevibacillus composti strain FJAT-54424     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4421235..4431693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ56_RS21900 (KDJ56_21900) rplI 4422492..4422938 (-) 447 WP_198828015.1 50S ribosomal protein L9 -
  KDJ56_RS21905 (KDJ56_21905) - 4422968..4424905 (-) 1938 WP_198828016.1 DHH family phosphoesterase -
  KDJ56_RS21910 (KDJ56_21910) - 4424910..4425818 (-) 909 WP_198828017.1 DUF2232 domain-containing protein -
  KDJ56_RS21915 (KDJ56_21915) rpsR 4425948..4426178 (-) 231 WP_023559077.1 30S ribosomal protein S18 -
  KDJ56_RS21920 (KDJ56_21920) ssbA 4426235..4426693 (-) 459 WP_198828018.1 single-stranded DNA-binding protein Machinery gene
  KDJ56_RS21925 (KDJ56_21925) rpsF 4426724..4427011 (-) 288 WP_198828019.1 30S ribosomal protein S6 -
  KDJ56_RS21930 (KDJ56_21930) ychF 4427151..4428251 (-) 1101 WP_198828020.1 redox-regulated ATPase YchF -
  KDJ56_RS21935 (KDJ56_21935) pepF 4428530..4430440 (-) 1911 WP_198828021.1 oligoendopeptidase F -
  KDJ56_RS21940 (KDJ56_21940) - 4430792..4430881 (+) 90 WP_198828022.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16655.72 Da        Isoelectric Point: 6.3957

>NTDB_id=560045 KDJ56_RS21920 WP_198828018.1 4426235..4426693(-) (ssbA) [Brevibacillus composti strain FJAT-54424]
MNKVILIGNLTKDPELRYTPNGVAVTTFTLAINRPRPNQAGEREADFINIVAWQKLADLCATYLRKGRQAAVEGRLQTRS
YDNKEGKKVYVTEVVAENVQFLGGKGGEGSGFDPGFGGSKPFGGQRDEMDAFRDPFANTGKPINISDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=560045 KDJ56_RS21920 WP_198828018.1 4426235..4426693(-) (ssbA) [Brevibacillus composti strain FJAT-54424]
ATGAATAAAGTCATTCTCATCGGCAACCTGACGAAAGATCCGGAGCTTCGCTATACGCCGAATGGCGTCGCCGTTACCAC
CTTTACCTTGGCCATCAACCGTCCGCGTCCGAACCAGGCGGGCGAGCGTGAAGCCGACTTCATTAATATTGTCGCTTGGC
AAAAGCTGGCCGACCTGTGCGCTACCTATTTGCGCAAAGGAAGACAAGCTGCTGTCGAGGGCCGTCTGCAGACGCGCTCC
TATGACAATAAGGAAGGAAAAAAGGTATACGTGACGGAAGTCGTTGCGGAGAACGTTCAGTTTCTCGGCGGAAAAGGCGG
AGAAGGTTCGGGCTTTGACCCAGGCTTTGGCGGAAGCAAACCGTTCGGCGGTCAGAGGGATGAGATGGATGCGTTTAGGG
ATCCCTTTGCGAATACTGGCAAGCCTATCAACATTTCGGACGATGACTTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T5EKS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.386

100

0.612
  ssb Latilactobacillus sakei subsp. sakei 23K

43.787

100

0.487
  ssb Neisseria gonorrhoeae MS11

34.104

100

0.388
  ssb Neisseria meningitidis MC58

33.526

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.818

72.368

0.375
  ssb Glaesserella parasuis strain SC1401

31.638

100

0.368