Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   KEM15_RS10220 Genome accession   NZ_CP073632
Coordinates   1968621..1969802 (+) Length   393 a.a.
NCBI ID   WP_217374443.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1963621..1974802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS10190 (KEM15_10025) - 1964193..1966772 (+) 2580 WP_274504410.1 YfhO family protein -
  KEM15_RS10210 (KEM15_10045) - 1967201..1967863 (-) 663 WP_274504411.1 YoaK family protein -
  KEM15_RS10215 (KEM15_10050) rlmH 1967891..1968370 (-) 480 WP_130554909.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  KEM15_RS10220 (KEM15_10055) htrA 1968621..1969802 (+) 1182 WP_217374443.1 trypsin-like peptidase domain-containing protein Regulator
  KEM15_RS10225 (KEM15_10060) spo0J 1969865..1970623 (+) 759 WP_274504412.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41147.89 Da        Isoelectric Point: 4.2563

>NTDB_id=559544 KEM15_RS10220 WP_217374443.1 1968621..1969802(+) (htrA) [Streptococcus parasuis strain NN1]
MKKLLKFVILFVVGFLGGIGGYYFASSTLTQGNSTSNQANTTSVSNVQYSNETSTTKAVEKVQDAVVSVINYQTQSSDSL
SSIFGNIESSDELAVAGEGSGVIYKKDGDTAYIVTNNHVISGAEKIDILLASGEKLSGELVGADTYSDIAVIKIAADKVT
TIAEFANSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQTEDGQTISTNAIQTDAAINPGNSGGPLINIQGQ
VIGINSSKITSSSVSSSGVAIEGMGFAIPSNDVVQIINQLETNGKVTRPALGVQMVNLTDLSTSQLEKAGLANTDLTSGV
LIVSTQPGLPADGKFEPYDVIIEIDGETIENKSDLQSELYKHQIGDTITVTYYRNNKKMTVDIKLTHSTDDLS

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=559544 KEM15_RS10220 WP_217374443.1 1968621..1969802(+) (htrA) [Streptococcus parasuis strain NN1]
ATGAAAAAATTATTGAAATTTGTTATTTTGTTTGTTGTTGGATTTTTAGGAGGAATTGGTGGGTATTACTTTGCTTCATC
AACTCTGACTCAAGGAAATTCTACTTCAAATCAAGCAAATACAACCAGTGTAAGCAATGTTCAATATAGCAACGAAACTT
CCACCACTAAAGCTGTGGAAAAAGTTCAAGATGCTGTTGTCTCCGTTATCAATTATCAAACTCAATCATCGGATAGCCTC
AGTTCTATTTTTGGTAACATTGAAAGTTCAGATGAGCTAGCTGTTGCTGGAGAAGGTTCAGGTGTTATTTATAAAAAAGA
TGGTGATACAGCATATATTGTTACAAACAACCACGTAATTTCAGGTGCTGAAAAAATCGATATACTTTTGGCTTCTGGAG
AAAAGCTTAGCGGAGAACTCGTAGGTGCAGATACTTATTCAGACATTGCTGTTATCAAAATTGCTGCAGATAAAGTGACC
ACTATTGCTGAATTTGCTAATTCAGACACAATTAAAGTTGGAGAAACTGCGATTGCAATTGGTAGCCCATTAGGAAGTGT
CTATGCAAATACAGTAACCCAGGGGATTATTTCTAGTCTCAGTCGTACAGTAACTTCACAAACAGAAGATGGCCAAACAA
TCTCAACAAATGCTATCCAGACTGATGCAGCCATTAACCCAGGTAACTCAGGTGGACCACTTATCAATATTCAAGGACAA
GTTATCGGTATCAACTCAAGTAAAATAACCTCTAGTTCTGTCAGCAGTTCAGGAGTTGCAATAGAAGGAATGGGCTTTGC
AATTCCCTCAAATGATGTTGTACAGATTATTAATCAATTAGAAACAAATGGTAAAGTTACTCGTCCAGCTCTTGGTGTAC
AAATGGTCAATCTAACAGACCTATCTACTAGTCAATTAGAAAAAGCAGGATTAGCAAATACAGACTTAACATCTGGAGTA
CTAATTGTATCTACTCAACCAGGTTTGCCAGCTGATGGAAAATTTGAACCATATGATGTCATTATTGAAATCGATGGTGA
AACCATTGAAAATAAGAGTGATTTACAAAGTGAACTTTACAAGCATCAAATTGGCGACACCATAACTGTTACCTATTATA
GAAATAATAAGAAAATGACTGTTGACATTAAGTTGACACATTCAACGGATGATTTGTCATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(289-385)

Trypsin-like peptidase domain (Trypsin_2)

(99-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.364

100

0.618
  htrA Streptococcus gordonii str. Challis substr. CH1

60.406

100

0.606
  htrA Streptococcus pneumoniae Rx1

57.398

99.746

0.573
  htrA Streptococcus pneumoniae TIGR4

57.398

99.746

0.573
  htrA Streptococcus pneumoniae D39

57.398

99.746

0.573
  htrA Streptococcus pneumoniae R6

57.398

99.746

0.573
  htrA Streptococcus mitis NCTC 12261

56.888

99.746

0.567