Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   KEM15_RS08315 Genome accession   NZ_CP073632
Coordinates   1609450..1611417 (-) Length   655 a.a.
NCBI ID   WP_274504254.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1604450..1616417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS08295 (KEM15_08165) amiF 1604940..1605863 (-) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  KEM15_RS08300 (KEM15_08170) amiE 1605873..1606937 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  KEM15_RS08305 (KEM15_08175) amiD 1606947..1607873 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  KEM15_RS08310 (KEM15_08180) amiC 1607873..1609372 (-) 1500 WP_274504253.1 ABC transporter permease Regulator
  KEM15_RS08315 (KEM15_08185) amiA 1609450..1611417 (-) 1968 WP_274504254.1 peptide ABC transporter substrate-binding protein Regulator
  KEM15_RS08320 (KEM15_08190) pbp3 1611630..1612871 (+) 1242 WP_274504255.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  KEM15_RS08325 (KEM15_08195) sufB 1613624..1615039 (-) 1416 WP_172036753.1 Fe-S cluster assembly protein SufB -
  KEM15_RS08330 (KEM15_08200) sufU 1615457..1615896 (-) 440 Protein_1613 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72716.40 Da        Isoelectric Point: 4.2350

>NTDB_id=559528 KEM15_RS08315 WP_274504254.1 1609450..1611417(-) (amiA) [Streptococcus parasuis strain NN1]
MKRNKLFALAGITLLSASLLVACGSNSSSNSETSTTYSYVYTEDPTSLDYIAYNRAQISDIVTNMVDGLLENDKYGNLIP
SLAEDWKVSKDGLTYTYTLREGVKWYTAEGEEYADVTANDFVTAIKHAVDTQSEGLYIIQDSIAGLDDYVNGKTSDFETV
GVKALDDRTVQYTLSHPEPYWNSKLTMSIMLPVNAEFLESKGEDFGKVEPDGILYNGAYFISAMTSKSSLEYTKNENYWD
ADNVKIENVKLTYYDGQDPESLVRGFTDGIYSNARIYPNSSSYSSVKEQYADNITYSLQDATVYFTTLNLNRSNYGHTAK
TTDVQKESARKALLNKDFRQAFTFAFNRQDYLAQSVGEDAADKPLRNLLVPPTFVSAGEKSFGDLVSEKVISYGDEWADV
DFSDAQNGLYNVDKAKVEFEKAKQTLSAEGVEFPIHLDMPVNQSSEVSTQQAASLKQSVEAALGTENIVIDLQMMDTDTF
TNAAFYTETPDQNDYDITYSGWGPDYQDPSTYLDILETTSGAMTSKLGIDSSTTDVIKTVGLDKYDALLKEASDEKLDVV
KRYEKYAEAQAWLTDSAIVIPYMSLGGTPSVSKVIPYTASTSDVGIKGSGSFYKYMEVGTEVNKAKDVYAKREKWLKEKA
ESNAKAQEELANHVE

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=559528 KEM15_RS08315 WP_274504254.1 1609450..1611417(-) (amiA) [Streptococcus parasuis strain NN1]
ATGAAACGAAATAAATTGTTTGCATTAGCAGGTATTACTCTGCTGTCAGCCTCGTTATTGGTTGCATGTGGTTCCAATTC
TAGCTCAAATTCTGAAACTAGTACAACTTATTCGTATGTTTATACTGAAGATCCAACTTCTTTAGATTACATTGCTTATA
ACCGTGCGCAAATTTCTGATATTGTTACTAATATGGTGGATGGTTTGTTAGAGAATGATAAGTACGGTAACTTAATCCCC
TCTCTTGCTGAAGATTGGAAGGTTTCAAAAGATGGTTTAACATATACTTATACTCTTCGTGAGGGCGTAAAATGGTATAC
AGCTGAAGGTGAAGAATATGCTGACGTGACAGCAAATGACTTTGTAACAGCTATTAAACATGCTGTGGATACACAGTCTG
AAGGTTTATATATTATCCAAGATTCAATTGCTGGTTTAGATGACTATGTTAACGGTAAAACAAGTGACTTTGAAACTGTT
GGTGTTAAGGCTTTAGATGACCGTACTGTTCAGTATACTTTGAGCCATCCAGAACCATATTGGAACTCAAAGTTAACCAT
GTCAATCATGTTGCCTGTAAATGCGGAATTCTTAGAATCAAAAGGTGAAGACTTTGGTAAAGTAGAGCCAGATGGAATTC
TTTACAATGGTGCATACTTTATTAGTGCAATGACATCTAAATCTTCACTTGAATATACAAAGAATGAAAACTACTGGGAT
GCCGACAATGTTAAAATTGAGAATGTTAAGTTAACATATTATGATGGGCAAGATCCAGAATCTTTGGTAAGGGGCTTCAC
GGATGGAATCTATTCTAATGCTCGAATATATCCAAATTCGTCTAGCTATTCATCTGTTAAAGAACAATATGCTGATAACA
TCACTTATAGCCTTCAAGATGCAACAGTATATTTCACTACTTTGAACTTAAATCGTTCAAACTATGGTCATACTGCAAAA
ACAACAGATGTTCAGAAAGAATCAGCTAGAAAAGCATTATTAAATAAAGATTTTCGTCAAGCCTTTACTTTCGCATTTAA
CCGCCAAGATTACTTAGCACAATCAGTTGGTGAGGACGCTGCAGATAAGCCATTACGCAACTTGTTAGTTCCTCCTACTT
TTGTAAGTGCAGGCGAAAAATCATTTGGTGATTTAGTAAGTGAAAAAGTAATCTCATACGGAGATGAGTGGGCAGATGTA
GATTTCTCTGATGCTCAAAATGGGCTTTACAACGTTGATAAGGCAAAAGTTGAATTTGAAAAGGCAAAACAAACACTTTC
TGCTGAAGGAGTTGAATTCCCTATTCACTTAGATATGCCAGTTAACCAAAGTAGTGAGGTTAGTACACAACAAGCTGCTT
CATTGAAACAGTCTGTTGAAGCGGCATTAGGCACTGAAAATATTGTAATTGATCTTCAGATGATGGATACAGATACGTTT
ACAAACGCAGCTTTCTACACTGAAACACCCGATCAAAATGATTATGACATTACATACAGTGGATGGGGTCCTGACTACCA
AGATCCGTCTACCTACCTTGATATATTAGAAACAACATCTGGTGCGATGACTAGCAAGTTGGGTATTGATTCAAGTACGA
CTGATGTGATTAAAACAGTTGGGCTAGACAAATACGACGCGCTTCTTAAAGAAGCTTCTGATGAAAAACTTGATGTTGTA
AAACGATATGAAAAATATGCCGAAGCTCAAGCTTGGTTAACTGATAGCGCGATTGTAATCCCGTATATGTCATTAGGCGG
TACTCCTAGTGTATCTAAGGTTATTCCTTACACAGCATCTACGTCTGATGTTGGTATCAAAGGCAGTGGCTCATTCTACA
AATATATGGAAGTGGGCACTGAAGTAAACAAGGCAAAAGATGTTTACGCTAAGCGTGAAAAATGGTTAAAAGAAAAAGCT
GAGTCAAATGCTAAAGCTCAAGAAGAACTTGCTAACCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.697

100

0.551
  amiA3 Streptococcus thermophilus LMD-9

53.788

100

0.542
  amiA3 Streptococcus thermophilus LMG 18311

53.636

100

0.54