Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KEM15_RS08300 Genome accession   NZ_CP073632
Coordinates   1605873..1606937 (-) Length   354 a.a.
NCBI ID   WP_274504252.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600873..1611937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS08285 (KEM15_08155) - 1601872..1603140 (-) 1269 WP_274504250.1 MATE family efflux transporter -
  KEM15_RS08290 (KEM15_08160) thrC 1603244..1604728 (-) 1485 WP_217374203.1 threonine synthase -
  KEM15_RS08295 (KEM15_08165) amiF 1604940..1605863 (-) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  KEM15_RS08300 (KEM15_08170) amiE 1605873..1606937 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  KEM15_RS08305 (KEM15_08175) amiD 1606947..1607873 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  KEM15_RS08310 (KEM15_08180) amiC 1607873..1609372 (-) 1500 WP_274504253.1 ABC transporter permease Regulator
  KEM15_RS08315 (KEM15_08185) amiA 1609450..1611417 (-) 1968 WP_274504254.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39545.42 Da        Isoelectric Point: 4.8911

>NTDB_id=559525 KEM15_RS08300 WP_274504252.1 1605873..1606937(-) (amiE) [Streptococcus parasuis strain NN1]
MAEKNNVILSAKDVVVEFEVRDRVLTAIRNVSIDFIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRIASGSIIYRGEEL
TDIKKHEEWEKIRGAKIATIFQDPMTSLNPLVTIGRQITEVIIKHQGKSISEAKELAVNYMERVGIPDAKKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQILDLLKELQKEYNFTTIFITHDLGVVASIADKVAVMYAGEVVE
FGTVEDIFYDPRHPYTWSLLSSLPQLANFNGELFSIPGTPPSLFTPVLGDAFASRSEFAMQVDFEESPPIFQVTENHWAK
TWLLHPEAPKATKPEVIQDLHSKIKSKMSVEDIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=559525 KEM15_RS08300 WP_274504252.1 1605873..1606937(-) (amiE) [Streptococcus parasuis strain NN1]
ATGGCAGAAAAAAACAATGTAATATTATCCGCAAAAGATGTGGTCGTGGAATTTGAAGTTCGTGACCGTGTTTTGACAGC
TATACGTAATGTCTCTATAGATTTTATCGAGGGAGAGGTTCTCGCAATTGTAGGGGAGTCTGGTTCTGGAAAGTCAGTTT
TGACAAAAACTTTCACAGGGATGCTGGAAGAGAATGGACGAATTGCTTCAGGAAGTATTATTTATCGTGGAGAAGAATTA
ACTGATATAAAAAAACATGAAGAATGGGAAAAAATACGTGGTGCAAAAATTGCAACTATTTTCCAGGATCCAATGACAAG
TCTTAATCCTTTGGTTACAATTGGCCGCCAAATTACCGAAGTTATCATTAAACATCAAGGAAAATCAATTTCTGAGGCAA
AAGAACTTGCGGTTAATTATATGGAACGAGTGGGTATTCCAGATGCAAAAAAACGTTTCAATGAATACCCGTTTCAATAT
TCAGGTGGTATGCGACAAAGAATTGTTATTGCAATTGCCTTAGCATGCCGTCCAGATGTATTAATTTGTGATGAACCAAC
AACAGCATTAGATGTAACAATACAAGCTCAAATTTTAGACTTATTAAAAGAATTACAAAAAGAATACAATTTTACAACAA
TTTTCATCACGCATGATTTGGGTGTTGTTGCAAGCATCGCTGACAAAGTTGCTGTTATGTATGCTGGCGAAGTTGTTGAA
TTTGGAACCGTAGAAGACATCTTTTATGACCCTCGACATCCATATACATGGAGTCTACTTTCAAGTCTTCCTCAGTTAGC
CAATTTTAATGGAGAACTCTTTTCAATTCCAGGAACACCTCCTTCACTTTTCACTCCGGTCTTAGGAGATGCATTTGCAT
CTCGTTCTGAATTCGCGATGCAGGTTGATTTTGAAGAATCTCCACCTATTTTTCAAGTTACAGAAAATCATTGGGCTAAA
ACTTGGTTATTACACCCTGAAGCTCCTAAAGCGACCAAACCAGAAGTGATTCAGGATTTACATTCAAAAATTAAATCTAA
GATGTCAGTAGAAGATATTAAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.937

98.588

0.768
  amiE Streptococcus thermophilus LMG 18311

77.65

98.588

0.766
  amiE Streptococcus thermophilus LMD-9

77.65

98.588

0.766
  oppD Streptococcus mutans UA159

56.047

95.763

0.537