Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   KEM15_RS08295 Genome accession   NZ_CP073632
Coordinates   1604940..1605863 (-) Length   307 a.a.
NCBI ID   WP_274504251.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599940..1610863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS08280 (KEM15_08150) mvk 1600400..1601335 (-) 936 WP_217374200.1 mevalonate kinase -
  KEM15_RS08285 (KEM15_08155) - 1601872..1603140 (-) 1269 WP_274504250.1 MATE family efflux transporter -
  KEM15_RS08290 (KEM15_08160) thrC 1603244..1604728 (-) 1485 WP_217374203.1 threonine synthase -
  KEM15_RS08295 (KEM15_08165) amiF 1604940..1605863 (-) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  KEM15_RS08300 (KEM15_08170) amiE 1605873..1606937 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  KEM15_RS08305 (KEM15_08175) amiD 1606947..1607873 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  KEM15_RS08310 (KEM15_08180) amiC 1607873..1609372 (-) 1500 WP_274504253.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34735.05 Da        Isoelectric Point: 7.2523

>NTDB_id=559524 KEM15_RS08295 WP_274504251.1 1604940..1605863(-) (amiF) [Streptococcus parasuis strain NN1]
MTEKLVEIKDLEISFGEGRKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIRLNETSGGDILYNGEKINGKISHE
KSRELIKKIQMIFQDPAASLNERATVDYIISEGLYNFKLFKNEEERQAKVRSMMTEVGLLAEHLTRFPHEFSGGQRQRIG
IARALVMNPELVIADEPISALDVSVRAQVLNLLKRLQKELGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFK
NPLHPYTRSLLSAVPIPDPILERQKTLVVYDPNMHDYSVDKPEMHEIKPGHFVWSNKAEFAKYSEGI

Nucleotide


Download         Length: 924 bp        

>NTDB_id=559524 KEM15_RS08295 WP_274504251.1 1604940..1605863(-) (amiF) [Streptococcus parasuis strain NN1]
ATGACTGAAAAATTAGTTGAAATCAAAGATTTAGAAATTTCTTTCGGTGAAGGGCGCAAAAAATTTGTAGCTGTCAAAAA
TGCTAATTTCTTTATTAATCGTGGAGAAACATTCTCCTTAGTTGGAGAATCGGGGTCTGGTAAGACAACGATTGGTCGTG
CGATAATTAGACTAAATGAAACAAGTGGTGGAGATATTCTTTATAATGGAGAGAAAATAAATGGGAAAATTTCTCATGAG
AAGTCTCGAGAATTAATTAAGAAAATTCAAATGATTTTTCAAGATCCAGCAGCGAGTTTGAATGAACGTGCAACAGTAGA
CTATATTATCTCTGAGGGCTTGTACAATTTTAAATTGTTTAAGAATGAAGAAGAGCGGCAAGCAAAAGTTCGGTCAATGA
TGACAGAAGTGGGGCTACTTGCGGAACACTTAACACGCTTTCCTCATGAGTTCTCAGGAGGCCAACGCCAGAGGATAGGT
ATAGCTCGAGCACTTGTGATGAATCCTGAATTGGTGATTGCCGATGAACCGATTTCTGCATTAGATGTGTCTGTTAGAGC
TCAAGTCTTAAATTTATTGAAGAGATTGCAAAAAGAACTGGGCTTAACTTATCTCTTTATTGCACATGATTTGTCAGTTG
TTCGGTTTATTTCTGATAGGATTGCAGTGATTCATAAAGGTGTTATTGTAGAAGTGGCAGAAACAGAGGAATTGTTTAAG
AATCCTTTGCATCCATACACTCGTTCCTTACTATCTGCTGTTCCTATTCCGGATCCAATTTTAGAAAGACAAAAAACTTT
AGTAGTATATGATCCAAATATGCATGATTATTCTGTAGATAAGCCAGAAATGCATGAAATCAAGCCAGGTCATTTTGTAT
GGTCAAATAAAGCAGAATTTGCAAAATATTCAGAAGGCATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

80.858

98.697

0.798
  amiF Streptococcus thermophilus LMD-9

80.528

98.697

0.795
  amiF Streptococcus salivarius strain HSISS4

80.198

98.697

0.792