Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   KEM15_RS08305 Genome accession   NZ_CP073632
Coordinates   1606947..1607873 (-) Length   308 a.a.
NCBI ID   WP_274504946.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601947..1612873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS08290 (KEM15_08160) thrC 1603244..1604728 (-) 1485 WP_217374203.1 threonine synthase -
  KEM15_RS08295 (KEM15_08165) amiF 1604940..1605863 (-) 924 WP_274504251.1 ATP-binding cassette domain-containing protein Regulator
  KEM15_RS08300 (KEM15_08170) amiE 1605873..1606937 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  KEM15_RS08305 (KEM15_08175) amiD 1606947..1607873 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  KEM15_RS08310 (KEM15_08180) amiC 1607873..1609372 (-) 1500 WP_274504253.1 ABC transporter permease Regulator
  KEM15_RS08315 (KEM15_08185) amiA 1609450..1611417 (-) 1968 WP_274504254.1 peptide ABC transporter substrate-binding protein Regulator
  KEM15_RS08320 (KEM15_08190) pbp3 1611630..1612871 (+) 1242 WP_274504255.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34591.45 Da        Isoelectric Point: 9.4261

>NTDB_id=559526 KEM15_RS08305 WP_274504946.1 1606947..1607873(-) (amiD) [Streptococcus parasuis strain NN1]
MSTIDKSKFQFVKRDDFASEVIDTPAYSYWNSVFRQFLKKKSTIVMLIILVAIVLMSFIYPIFANYDFNDVSKINDFSAR
YNWPNAEYWFGTDANGQSLFDGVWYGARNSILIALIATAINLVVGVILGGIWGVSKTFDKIMMEIYNVISNIPSLMIFIV
MSYALGAGFWNLILAFCLTGWIGVAFSIRIQIMRYRDLEYNLASRTLGTPTFKLVVKNLLPQLVSVIVTQASQSLPSYIS
TEAFLSYFGIGLPVTTPSLGRLLSKYAQNVTTNAYLFWIPLAALILVSLSLFIVGQNLSDASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=559526 KEM15_RS08305 WP_274504946.1 1606947..1607873(-) (amiD) [Streptococcus parasuis strain NN1]
ATGTCAACAATTGATAAAAGTAAATTTCAATTTGTAAAACGTGATGATTTTGCCTCGGAGGTAATTGATACTCCTGCCTA
CTCATATTGGAATTCTGTATTTCGACAGTTTCTAAAGAAAAAATCAACCATTGTAATGTTAATTATTTTGGTAGCCATCG
TCCTTATGAGTTTTATTTATCCCATTTTTGCAAATTATGATTTCAATGATGTAAGTAAAATTAATGATTTCAGCGCTCGT
TATAATTGGCCAAATGCCGAGTATTGGTTCGGAACTGATGCAAATGGACAGTCTCTATTTGATGGGGTTTGGTATGGAGC
AAGAAATTCAATTTTGATTGCACTTATTGCGACTGCTATTAACCTTGTCGTTGGTGTCATCCTTGGGGGAATCTGGGGTG
TATCAAAGACTTTTGATAAAATAATGATGGAAATTTACAATGTCATATCAAATATTCCATCACTAATGATTTTTATTGTA
ATGTCATATGCTCTTGGAGCTGGCTTCTGGAATTTGATATTAGCATTTTGTTTAACAGGATGGATTGGTGTAGCGTTTTC
AATCCGAATCCAGATTATGAGATATCGCGATTTGGAATATAATTTGGCTAGTCGCACGCTCGGTACTCCAACTTTTAAAT
TAGTAGTAAAAAACCTATTGCCACAATTGGTATCTGTGATAGTAACACAAGCCTCACAAAGTTTACCAAGCTATATTTCA
ACGGAGGCCTTCCTTTCATACTTTGGAATAGGGCTCCCTGTGACAACACCAAGTTTAGGTCGATTGCTTTCTAAGTATGC
TCAAAATGTGACTACCAATGCATACTTATTTTGGATTCCTTTAGCAGCGTTAATCTTAGTTTCGCTATCACTCTTCATTG
TTGGACAAAATTTGTCTGATGCAAGTGACCCACGTACACATAGATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.922

100

0.779
  amiD Streptococcus thermophilus LMG 18311

76.299

100

0.763
  amiD Streptococcus thermophilus LMD-9

76.299

100

0.763