Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   KEM15_RS00380 Genome accession   NZ_CP073632
Coordinates   63463..64365 (+) Length   300 a.a.
NCBI ID   WP_274504430.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 58463..69365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS00350 (KEM15_00340) - 58750..59496 (-) 747 WP_217374488.1 amino acid ABC transporter ATP-binding protein -
  KEM15_RS00355 (KEM15_00345) - 59501..60178 (-) 678 WP_024392848.1 amino acid ABC transporter permease -
  KEM15_RS00360 (KEM15_00350) - 60159..60818 (-) 660 WP_217375124.1 amino acid ABC transporter permease -
  KEM15_RS00365 (KEM15_00355) ruvB 60946..61944 (+) 999 WP_274504428.1 Holliday junction branch migration DNA helicase RuvB -
  KEM15_RS00370 (KEM15_00360) - 61944..62691 (+) 748 Protein_53 GNAT family N-acetyltransferase -
  KEM15_RS00375 (KEM15_00365) - 62693..63307 (+) 615 WP_274504429.1 HAD-IA family hydrolase -
  KEM15_RS00380 (KEM15_00370) comR 63463..64365 (+) 903 WP_274504430.1 transcriptional regulator Regulator
  KEM15_RS00390 (KEM15_00375) - 64572..65791 (+) 1220 Protein_56 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KEM15_RS00395 (KEM15_00380) - 65975..67495 (+) 1521 WP_274504433.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35892.12 Da        Isoelectric Point: 4.4084

>NTDB_id=559492 KEM15_RS00380 WP_274504430.1 63463..64365(+) (comR) [Streptococcus parasuis strain NN1]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRDQMLTIIYDEYYDELPEEEKIAIDAFQSKIDAFQTKSTQYGKSILDDYFEQVIRKTMFDVND
LLIIHLYLIHLDSEPENIIENQYFLEMVNRLHDQMEVMNLNELFVLRDVMMTSVGILGKIEAYDLMPSLFNALDKIMVLT
QDFQKKPILNLLKWKYELYVNKDQVAAYQYYEDAVKFAQLIGNDYLVRRIKEDWEEEDHL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=559492 KEM15_RS00380 WP_274504430.1 63463..64365(+) (comR) [Streptococcus parasuis strain NN1]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCGATCAAATGTTGACAATCATTTATGA
TGAATATTACGATGAGCTTCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCTAAGATAGATGCTTTTCAAACAA
AGTCTACTCAATATGGAAAGTCTATATTAGATGATTATTTTGAACAGGTTATTCGTAAAACTATGTTTGATGTCAATGAC
TTATTGATTATCCATTTATACTTAATTCATCTTGATAGTGAACCAGAAAATATTATTGAAAATCAATATTTTTTGGAGAT
GGTAAATCGACTCCATGATCAAATGGAGGTTATGAATTTGAATGAATTATTCGTTTTAAGGGATGTGATGATGACGTCTG
TTGGTATTTTAGGGAAAATAGAAGCTTACGACTTAATGCCTTCGCTTTTTAATGCCCTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCCATTTTAAATTTATTGAAATGGAAATATGAGTTATATGTTAACAAGGATCAAGTAGCAGC
ATACCAATATTATGAAGATGCTGTGAAGTTTGCTCAACTTATTGGAAATGATTATTTGGTTAGGAGAATAAAGGAGGATT
GGGAAGAGGAGGACCACCTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

59.797

98.667

0.59
  comR Streptococcus suis 05ZYH33

59.797

98.667

0.59
  comR Streptococcus suis D9

52.508

99.667

0.523
  comR Streptococcus mutans UA159

40.468

99.667

0.403
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.418

95.667

0.387
  comR Streptococcus pyogenes MGAS8232

38.591

99.333

0.383
  comR Streptococcus pyogenes MGAS315

36.7

99

0.363