Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SCSC_RS02170 Genome accession   NZ_AP014647
Coordinates   428379..429044 (+) Length   221 a.a.
NCBI ID   WP_003043136.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423379..434044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS02150 (SCSC_0442) - 424987..425154 (+) 168 Protein_398 cell filamentation protein Fic -
  SCSC_RS02155 (SCSC_0443) cysK 425360..426289 (-) 930 WP_006269877.1 cysteine synthase A -
  SCSC_RS02160 (SCSC_0444) - 426389..427024 (-) 636 WP_006269864.1 YigZ family protein -
  SCSC_RS02165 (SCSC_0445) comFA/cflA 427081..428382 (+) 1302 WP_037565799.1 DEAD/DEAH box helicase Machinery gene
  SCSC_RS02170 (SCSC_0446) comFC/cflB 428379..429044 (+) 666 WP_003043136.1 ComF family protein Machinery gene
  SCSC_RS02175 (SCSC_0447) raiA 429123..429665 (+) 543 WP_003032381.1 ribosome-associated translation inhibitor RaiA -
  SCSC_RS02180 (SCSC_0448) rsmD 429863..430402 (+) 540 WP_037565796.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SCSC_RS02185 (SCSC_0449) coaD 430392..430889 (+) 498 WP_003070176.1 pantetheine-phosphate adenylyltransferase -
  SCSC_RS02190 (SCSC_0450) sepM 430870..431925 (+) 1056 WP_003070174.1 SepM family pheromone-processing serine protease Regulator
  SCSC_RS02195 (SCSC_0451) - 432212..432769 (+) 558 WP_003070172.1 YutD family protein -
  SCSC_RS02200 (SCSC_0452) rlmN 432803..433885 (+) 1083 WP_006269861.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25399.48 Da        Isoelectric Point: 7.3982

>NTDB_id=55934 SCSC_RS02170 WP_003043136.1 428379..429044(+) (comFC/cflB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MNNCLLCESLLDEKLTFCDLLTLKKPKAKACDACFEKFQRISAQHCPKCYRDGIDEICIDCDVWTKKGKEVCHKSCFVYN
EAMKNFFSQYKFQGDYALSSVFTEVLHQELKNYSDYTLVPIPVSVEKYQARGFNQVTAFLEGTKLQFKEILEKYDTIAQS
SKMREERLQSQQCFKVKDKVTLPAKILLIDDIYTTGATLQLAKDILVEAGVKEILTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=55934 SCSC_RS02170 WP_003043136.1 428379..429044(+) (comFC/cflB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAATAACTGTCTGTTATGTGAAAGTCTACTTGATGAAAAGCTAACATTTTGTGATTTGCTGACTTTGAAGAAGCCCAA
AGCAAAAGCTTGTGATGCTTGTTTTGAAAAATTCCAGCGTATTTCAGCGCAACATTGCCCTAAGTGCTATCGTGACGGAA
TAGATGAAATCTGCATAGACTGTGATGTGTGGACAAAGAAAGGAAAAGAAGTTTGCCATAAGAGTTGTTTTGTCTATAAT
GAAGCTATGAAAAACTTCTTTAGTCAATATAAATTTCAAGGAGATTATGCTCTTTCTTCTGTATTTACTGAAGTTTTGCA
TCAAGAATTAAAAAATTATAGCGATTATACGCTCGTGCCAATTCCTGTGAGTGTAGAAAAGTATCAAGCAAGAGGGTTTA
ATCAAGTAACAGCTTTTCTTGAGGGTACAAAGTTGCAATTTAAGGAAATTTTAGAAAAATATGATACAATTGCTCAATCA
AGCAAGATGAGAGAGGAGCGATTGCAGAGCCAGCAGTGCTTTAAAGTAAAAGACAAGGTTACACTTCCAGCAAAAATTCT
TTTGATAGATGATATTTATACCACAGGAGCAACCTTACAACTTGCCAAAGATATTTTAGTGGAAGCGGGTGTGAAAGAAA
TTTTGACATTTTCATTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.706

98.643

0.471
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

98.643

0.466
  comFC/cflB Streptococcus mitis NCTC 12261

47.248

98.643

0.466
  comFC/cflB Streptococcus pneumoniae D39

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae R6

46.789

98.643

0.462
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.362

Multiple sequence alignment