Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KDD30_RS03645 Genome accession   NZ_CP073578
Coordinates   812315..812599 (+) Length   94 a.a.
NCBI ID   WP_211647441.1    Uniprot ID   -
Organism   Photobacterium sp. GJ3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 807315..817599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDD30_RS03635 (KDD30_03635) hupB 809824..810096 (+) 273 WP_027252850.1 nucleoid-associated protein HU-beta -
  KDD30_RS03640 (KDD30_03640) ppiD 810288..812180 (+) 1893 WP_211647440.1 peptidylprolyl isomerase -
  KDD30_RS03645 (KDD30_03645) comEA 812315..812599 (+) 285 WP_211647441.1 ComEA family DNA-binding protein Machinery gene
  KDD30_RS03650 (KDD30_03650) rrtA 812654..813229 (-) 576 WP_249199186.1 rhombosortase -
  KDD30_RS03655 (KDD30_03655) - 813240..813869 (+) 630 WP_211647442.1 tRNA-uridine aminocarboxypropyltransferase -
  KDD30_RS03660 (KDD30_03660) - 813878..815236 (-) 1359 WP_371826078.1 anti-phage deoxyguanosine triphosphatase -
  KDD30_RS03665 (KDD30_03665) yfbR 815245..815829 (-) 585 WP_211647444.1 5'-deoxynucleotidase -
  KDD30_RS03670 (KDD30_03670) - 815934..817148 (-) 1215 WP_211647445.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 9939.50 Da        Isoelectric Point: 5.6805

>NTDB_id=559310 KDD30_RS03645 WP_211647441.1 812315..812599(+) (comEA) [Photobacterium sp. GJ3]
MKSSIALLMLAASVVVPGIADATTEHEGIEIVVNINTANVEELDKLLLGVGPDKAQSIVAFREAHGKFSTIEDLSKVKGI
GASTVEKNRARIQL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=559310 KDD30_RS03645 WP_211647441.1 812315..812599(+) (comEA) [Photobacterium sp. GJ3]
ATGAAAAGTTCGATTGCTTTACTGATGCTGGCAGCGAGTGTGGTCGTGCCGGGTATCGCCGATGCGACCACAGAGCATGA
AGGCATTGAAATCGTTGTCAATATCAATACAGCCAATGTTGAAGAGCTGGATAAATTGTTACTGGGTGTCGGGCCAGATA
AAGCTCAGAGCATTGTGGCTTTTCGTGAGGCACACGGGAAATTTTCGACCATTGAAGATTTGAGTAAAGTGAAGGGCATT
GGCGCTTCCACGGTCGAAAAAAACAGAGCCAGAATCCAGCTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

46.939

100

0.489
  comEA Vibrio cholerae C6706

58.667

79.787

0.468
  comEA Vibrio cholerae strain A1552

58.667

79.787

0.468
  comEA Vibrio parahaemolyticus RIMD 2210633

57.143

74.468

0.426
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.887

75.532

0.362
  comEA Acinetobacter baylyi ADP1

49.275

73.404

0.362