Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   KC397_RS17925 Genome accession   NZ_CP073274
Coordinates   607385..609433 (-) Length   682 a.a.
NCBI ID   WP_212572728.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 602385..614433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS17910 (KC397_17910) clcA 603431..604828 (+) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  KC397_RS17915 (KC397_17915) - 604993..605949 (+) 957 WP_172558150.1 TDT family transporter -
  KC397_RS17920 (KC397_17920) cqsA 606168..607349 (+) 1182 WP_212572727.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  KC397_RS17925 (KC397_17925) cqsS 607385..609433 (-) 2049 WP_212572728.1 hybrid sensor histidine kinase/response regulator Regulator
  KC397_RS17930 (KC397_17930) - 609572..612613 (-) 3042 WP_212572729.1 SMC family ATPase -
  KC397_RS17935 (KC397_17935) - 612617..613759 (-) 1143 WP_212572730.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79161.82 Da        Isoelectric Point: 5.3896

>NTDB_id=558747 KC397_RS17925 WP_212572728.1 607385..609433(-) (cqsS) [Vibrio fluvialis strain 19-VB00936]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVADDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKTQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLSETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVTPLDIRQMLRDTDKELDKLFFDIAELVQDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRESDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=558747 KC397_RS17925 WP_212572728.1 607385..609433(-) (cqsS) [Vibrio fluvialis strain 19-VB00936]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTCGTGGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGCAGCTTTTGTTCGTGTTTGT
TCGGTGGCATCGCGTTTCGTAATTCCGTGCCCAAATTGTGGCAGCGGTATCTGCCGTATTATTACCTGTTTATGATAGGT
TTCTGCCTGCCATTCTTTTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCCTTTATGGCATC
AATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTCCAGGCCGCGATATCCATATTGGCAGCCTACG
GTGCGGTGTATTGGATTCAGCACTATGAGCCGCAACAGTATATTTTGTGGCCGTACGTACCGATTTTCCTATTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGAAACCAGAGCTCTCACGAATCAAAAGTCTCCATTGCCAAATCGTTCGGAGCGGG
CATCGCGCATGAAATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCTGCTCAAA
ATAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTCGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGATGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGCGAAGTCGTTGACTACGCGTTGCATTCGTTCTCCTATAAGCGTGCGATTGATCGTCAATCGGTGACTT
TAGTGGTCGCGGACGACTTCGACTATTTCGGCAGTGATACGCTGTTGAAATTTGCACTGTATAACTTGCTGAAAAACGCC
TTCTATTATCAGAACAGCGAGCAGTTCCATATTGATGTCACCCTGAAAACCCAGGGCAATCAGAACCTCATCGTGGTCAA
AGATAATGGCGTAGGCATTGCGCCGGATCGCATCGACGATATTTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ACGGACTTGGATTACCCTTCTGCCGCAAAGTGATGAAATCTTTTGGCGGTAACATTGCGTGTGCGTCGGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTCTGTATGAGTCTCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAAGGATTAATGAGTCGCCATTTAAGTGAGACATCGTTTTATCAGGGATTCCGTCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAATTCGAATATGATGCCATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGTAAACTGCACTTTACTGAAGCGCAAATTGTCTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATTGAGCGCCATTTACGCGTAACGCCGCTGGACATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAGCTGTTCTTTGATATCGCGGAACTGGTTCAGGATCGCAACGTGATTCCGCAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGTTGCGTACCTTCACCGCGTTGATGCTAGAAAAGCAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTAATCCTGATGG
ATATCGAAATGCCGTTTATCGATGGCATAGAAGCAACACGGGTTATTCGTGAGTCGGACAAGCCGTACCGCCACATTCCT
ATTGTCGGGCATACGGGCGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCTGATAAAGACAAACTACTTGGTAAGCTGGCAAACTGGATCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591