Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   KC397_RS17920 Genome accession   NZ_CP073274
Coordinates   606168..607349 (+) Length   393 a.a.
NCBI ID   WP_212572727.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 601168..612349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS17905 (KC397_17905) - 601981..602970 (-) 990 WP_024375466.1 GTP-binding protein -
  KC397_RS17910 (KC397_17910) clcA 603431..604828 (+) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  KC397_RS17915 (KC397_17915) - 604993..605949 (+) 957 WP_172558150.1 TDT family transporter -
  KC397_RS17920 (KC397_17920) cqsA 606168..607349 (+) 1182 WP_212572727.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  KC397_RS17925 (KC397_17925) cqsS 607385..609433 (-) 2049 WP_212572728.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43553.45 Da        Isoelectric Point: 6.7746

>NTDB_id=558746 KC397_RS17920 WP_212572727.1 606168..607349(+) (cqsA) [Vibrio fluvialis strain 19-VB00936]
MKTDAKNNRLPEFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEHQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILSTGLNRLGINIRSQSQ
IIALETGDERNTEKVRDYLEDNGIFGAVFCRPATSKTKNIIRLSLTSSVTAEHIDRILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=558746 KC397_RS17920 WP_212572727.1 606168..607349(+) (cqsA) [Vibrio fluvialis strain 19-VB00936]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTGAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAAAAGGCCATCGACGATACTCATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGATGAGTCGAAACCAAGCCTGGAACATCAACTGGCAGAGTTCGCTCACTTTGATTCCTGCCT
GCTGTCGCAATCGGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCGCCAGGAAGTAATGTCTATATCGACT
TCTTTGCTCATATGTCTATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCGGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATTGC
GCCGTTAGCTGAATTAGTCGCGATCGCTAAAGAGACCGGCAGCGCTATTCTCGTTGATGAATCGCACTCTCTTGGCACCC
ACGGTAAGAATGGCGCAGGTTTACTGGCAGAGTTAGGTTTATCTGATCAAGTGGATTTTATGACTGCGAGCCTGGCGAAA
ACGTTTGCTTATCGGGCGGGAGTTATCTGGGCAAATAATAACGTCAATCAGTGCGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTGCCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCCGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTCTACGGGATTAAATAGACTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAAGATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCCACATCGAAAACTAAGAATATTATTCGCTTGTCATTAACCAGTTCTGTCACTGCTGAACACA
TCGACCGTATTTTATCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTTTACTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

69.87

97.964

0.684