Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KBP46_RS14255 Genome accession   NZ_CP073027
Coordinates   3088066..3089175 (+) Length   369 a.a.
NCBI ID   WP_062673089.1    Uniprot ID   -
Organism   Chryseobacterium sp. PCH239     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3083066..3094175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP46_RS14235 (KBP46_14235) sufD 3083556..3084863 (+) 1308 WP_123278805.1 Fe-S cluster assembly protein SufD -
  KBP46_RS14240 (KBP46_14240) - 3084937..3085860 (-) 924 WP_062673095.1 DUF3078 domain-containing protein -
  KBP46_RS14245 (KBP46_14245) - 3086089..3087015 (-) 927 WP_062673093.1 DUF3078 domain-containing protein -
  KBP46_RS14250 (KBP46_14250) - 3087265..3088032 (+) 768 WP_062673091.1 rhomboid family intramembrane serine protease -
  KBP46_RS14255 (KBP46_14255) dprA 3088066..3089175 (+) 1110 WP_062673089.1 DNA-processing protein DprA Machinery gene
  KBP46_RS14260 (KBP46_14260) gdhA 3089366..3090724 (+) 1359 WP_062673086.1 NADP-specific glutamate dehydrogenase -
  KBP46_RS14265 (KBP46_14265) - 3090826..3091221 (+) 396 WP_253297049.1 iron chaperone -
  KBP46_RS14270 (KBP46_14270) - 3091264..3091566 (-) 303 WP_216443520.1 hypothetical protein -
  KBP46_RS14275 (KBP46_14275) - 3091804..3092262 (-) 459 WP_216445491.1 YkgJ family cysteine cluster protein -
  KBP46_RS14280 (KBP46_14280) - 3092292..3093263 (-) 972 WP_216443521.1 ion channel -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41502.36 Da        Isoelectric Point: 7.1726

>NTDB_id=557409 KBP46_RS14255 WP_062673089.1 3088066..3089175(+) (dprA) [Chryseobacterium sp. PCH239]
MTSEEYFYAIALRECSQIGDIHFHKLVRTFGSAQEAWKRAKKEYKKLEGIGQRTVSDIGNKSHLEFAEEELNFCEKNNIQ
IRLKHLKEIPSLLNECNDTPAILYQKGNIEDAQPKISIVGTRNMTAYGKQFIENFFEATRSSKYTSISGLALGVDKEVHE
QSICHQKPTVAVLAHGFQYLYPAKNRKLSEKILQEGGALITEFSSSRKPDRENFIQRNRIVAGISPATIVVETGFGGGSV
STAAFANDYNRDVFALPGKITDSSSQGCNQLIFHNKATAISTIKDLIELLGLNDPKEKMEELFPYSETKLQLSDNQNLIY
QSIQSYPQICLDDLSMRIDLPTHKILPIILELELLGKVKSFSGRQFIAI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=557409 KBP46_RS14255 WP_062673089.1 3088066..3089175(+) (dprA) [Chryseobacterium sp. PCH239]
ATGACCTCAGAAGAATACTTTTATGCCATCGCCCTCCGCGAATGCAGCCAGATTGGCGATATCCATTTTCATAAACTTGT
CCGTACTTTCGGAAGCGCTCAGGAAGCCTGGAAAAGAGCCAAAAAAGAATATAAAAAGCTGGAAGGAATAGGACAAAGAA
CAGTTTCAGATATTGGAAATAAGTCTCATTTGGAATTCGCAGAAGAAGAATTAAATTTTTGCGAAAAAAATAATATTCAA
ATCAGGTTAAAACACCTCAAAGAAATCCCGTCTCTACTTAATGAATGTAATGATACTCCCGCTATTCTTTATCAAAAAGG
GAATATTGAGGATGCACAGCCAAAAATAAGTATTGTAGGAACCCGAAATATGACCGCTTATGGAAAACAGTTTATTGAAA
ACTTTTTTGAAGCAACACGATCCTCAAAATATACATCCATAAGCGGTCTCGCTTTAGGCGTCGATAAAGAAGTTCATGAA
CAGTCTATTTGTCATCAAAAGCCTACTGTAGCTGTTCTTGCACATGGTTTTCAATATCTATATCCGGCAAAAAACAGAAA
ACTTTCTGAAAAAATTTTACAGGAAGGAGGAGCATTAATAACGGAGTTCAGCTCTTCCAGAAAACCTGACCGGGAAAACT
TTATCCAGAGAAACAGAATTGTGGCAGGAATATCCCCTGCAACGATTGTAGTGGAAACCGGTTTCGGAGGAGGCTCTGTG
AGCACAGCAGCCTTTGCCAATGATTATAACCGTGATGTTTTTGCACTGCCTGGAAAAATTACAGACAGTTCTAGCCAGGG
ATGTAATCAGCTGATTTTCCATAATAAAGCAACGGCAATTTCTACCATAAAAGATCTTATAGAACTCCTTGGATTAAATG
ATCCTAAAGAAAAAATGGAAGAGTTATTTCCTTATAGCGAGACCAAACTACAATTATCTGACAATCAGAACTTAATATAT
CAATCTATTCAATCTTATCCTCAAATCTGTTTAGACGATCTCTCCATGAGAATTGATCTTCCTACTCATAAAATCTTACC
AATAATTTTAGAATTGGAACTTTTAGGGAAAGTAAAATCATTTTCCGGGAGGCAATTCATCGCAATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

51.093

99.187

0.507