Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KBZ93_RS02335 Genome accession   NZ_CP073017
Coordinates   491185..491550 (+) Length   121 a.a.
NCBI ID   WP_014407071.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 486185..496550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBZ93_RS02320 (KBZ93_02330) cobT 486345..487454 (-) 1110 WP_010871651.1 nicotinate mononucleotide-dependent phosphoribosyltransferase CobT -
  KBZ93_RS02325 (KBZ93_02335) - 487568..489478 (+) 1911 WP_215849833.1 long-chain fatty acid--CoA ligase -
  KBZ93_RS02330 (KBZ93_02340) - 489823..490989 (+) 1167 WP_010871653.1 response regulator -
  KBZ93_RS02335 (KBZ93_02345) pilH 491185..491550 (+) 366 WP_014407071.1 response regulator transcription factor Machinery gene
  KBZ93_RS02340 (KBZ93_02350) - 491597..492160 (+) 564 WP_010871655.1 chemotaxis protein CheW -
  KBZ93_RS02345 (KBZ93_02355) pilJ 492231..494840 (+) 2610 WP_010871656.1 methyl-accepting chemotaxis protein Machinery gene
  KBZ93_RS02350 (KBZ93_02360) - 494929..495720 (+) 792 WP_010871657.1 ABC transporter permease -
  KBZ93_RS02355 (KBZ93_02365) - 495850..496107 (+) 258 WP_041425909.1 TatA/E family twin arginine-targeting protein translocase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13674.90 Da        Isoelectric Point: 5.8739

>NTDB_id=557379 KBZ93_RS02335 WP_014407071.1 491185..491550(+) (pilH) [Synechocystis sp. PCC 6803]
MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLRN

Nucleotide


Download         Length: 366 bp        

>NTDB_id=557379 KBZ93_RS02335 WP_014407071.1 491185..491550(+) (pilH) [Synechocystis sp. PCC 6803]
ATGAACGCAGTTTTGCTGGTTGAAGACAGCTCTAGTCAGCGCGAGATGATATCTGGCATCCTCAAAGACCATGGCTGGCA
GGTCACCATCGCCTGTGATGGGGTGGAGGCCCTGGAAAAATTGCAGAATTTTAGTCCGGACCTAGTGGTGCTAGATATTG
TCATGCCCCGCATGAATGGCTATGAGGTTTGTCGACGCATCAAATCCGATCCGAAAACCAAAAATGTGCCAGTGATTATG
TGCTCCTCCAAGGGGGAGGAATTTGACCGTTTTTGGGGCATGCGTCAGGGAGCCGACGCCTACATTGCCAAACCATTTCA
GCCCATGGAACTGGTGGGCACCATCAAACAACTCCTGCGCAATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

100

100

1
  pilG Acinetobacter baumannii strain A118

41.593

93.388

0.388
  chpA Acinetobacter baumannii strain A118

39.655

95.868

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372