Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   J9319_RS17045 Genome accession   NZ_CP072851
Coordinates   3253209..3254336 (-) Length   375 a.a.
NCBI ID   WP_046344588.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 6ww6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3248209..3259336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS17010 (J9319_17010) flgL 3248392..3249303 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  J9319_RS17015 (J9319_17015) flgK 3249312..3250832 (-) 1521 WP_116306293.1 flagellar hook-associated protein FlgK -
  J9319_RS17020 (J9319_17020) - 3250848..3251330 (-) 483 WP_007499977.1 flagellar protein FlgN -
  J9319_RS17025 (J9319_17025) flgM 3251349..3251612 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  J9319_RS17030 (J9319_17030) - 3251692..3252111 (-) 420 WP_210552221.1 TIGR03826 family flagellar region protein -
  J9319_RS17035 (J9319_17035) comFC 3252168..3252854 (-) 687 WP_189337174.1 ComF family protein Machinery gene
  J9319_RS17040 (J9319_17040) - 3252851..3253144 (-) 294 WP_035701582.1 competence protein ComFB -
  J9319_RS17045 (J9319_17045) comFA 3253209..3254336 (-) 1128 WP_046344588.1 DEAD/DEAH box helicase Machinery gene
  J9319_RS17050 (J9319_17050) - 3254708..3255550 (-) 843 WP_024719242.1 DegV family protein -
  J9319_RS17055 (J9319_17055) degU 3255762..3256451 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  J9319_RS17060 (J9319_17060) degS 3256516..3257691 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  J9319_RS17065 (J9319_17065) - 3257913..3258581 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42965.96 Da        Isoelectric Point: 10.4871

>NTDB_id=556398 J9319_RS17045 WP_046344588.1 3253209..3254336(-) (comFA) [Bacillus altitudinis strain 6ww6]
MLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLVVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
TESALVQISGRTGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNSAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=556398 J9319_RS17045 WP_046344588.1 3253209..3254336(-) (comFA) [Bacillus altitudinis strain 6ww6]
ATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAGACAAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGTTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCTTTTGATGTCCTCGTTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAGGATGT
TGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGTTCAGGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGTACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
ACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAACAGGGAGACATCCAGATTTTTTTAACGGAGACGTGTACTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATTCAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(236-335)

Type III restriction enzyme, res subunit (ResIII)

(32-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.676

98.667

0.549
  comFA/cflA Streptococcus pneumoniae Rx1

40.96

94.4

0.387
  comFA/cflA Streptococcus pneumoniae D39

40.96

94.4

0.387
  comFA/cflA Streptococcus pneumoniae R6

40.96

94.4

0.387
  comFA/cflA Streptococcus pneumoniae TIGR4

40.678

94.4

0.384
  comFA/cflA Streptococcus mitis NCTC 12261

40.395

94.4

0.381
  comFA Latilactobacillus sakei subsp. sakei 23K

37.634

99.2

0.373
  comFA/cflA Streptococcus mitis SK321

39.266

94.4

0.371
  comFA Lactococcus lactis subsp. cremoris KW2

37.158

97.6

0.363