Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   J9319_RS17055 Genome accession   NZ_CP072851
Coordinates   3255762..3256451 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain 6ww6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250762..3261451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS17020 (J9319_17020) - 3250848..3251330 (-) 483 WP_007499977.1 flagellar protein FlgN -
  J9319_RS17025 (J9319_17025) flgM 3251349..3251612 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  J9319_RS17030 (J9319_17030) - 3251692..3252111 (-) 420 WP_210552221.1 TIGR03826 family flagellar region protein -
  J9319_RS17035 (J9319_17035) comFC 3252168..3252854 (-) 687 WP_189337174.1 ComF family protein Machinery gene
  J9319_RS17040 (J9319_17040) - 3252851..3253144 (-) 294 WP_035701582.1 competence protein ComFB -
  J9319_RS17045 (J9319_17045) comFA 3253209..3254336 (-) 1128 WP_046344588.1 DEAD/DEAH box helicase Machinery gene
  J9319_RS17050 (J9319_17050) - 3254708..3255550 (-) 843 WP_024719242.1 DegV family protein -
  J9319_RS17055 (J9319_17055) degU 3255762..3256451 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  J9319_RS17060 (J9319_17060) degS 3256516..3257691 (-) 1176 WP_035389673.1 sensor histidine kinase Regulator
  J9319_RS17065 (J9319_17065) - 3257913..3258581 (+) 669 WP_017357860.1 YigZ family protein -
  J9319_RS17070 (J9319_17070) - 3258566..3259657 (+) 1092 WP_025208065.1 LCP family protein -
  J9319_RS17075 (J9319_17075) - 3259694..3260761 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=556399 J9319_RS17055 WP_008348273.1 3255762..3256451(-) (degU) [Bacillus altitudinis strain 6ww6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=556399 J9319_RS17055 WP_008348273.1 3255762..3256451(-) (degU) [Bacillus altitudinis strain 6ww6]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996