Detailed information NTG0556397

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: J9319_RS17035
• Genome accession: NZ_CP072851
• Coordinates: 3252168..3252854 (-)
• Length: 228 a.a.
• NCBI ID: WP_189337174.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain 6ww6
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3247168..3257854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9319_RS17000 (J9319_17000)	fliW	3247304..3247738 (-)	435	WP_007499985.1	flagellar assembly protein FliW	-
J9319_RS17005 (J9319_17005)	-	3247767..3248345 (-)	579	WP_035701576.1	DUF6470 family protein	-
J9319_RS17010 (J9319_17010)	flgL	3248392..3249303 (-)	912	WP_017368141.1	flagellar hook-associated protein FlgL	-
J9319_RS17015 (J9319_17015)	flgK	3249312..3250832 (-)	1521	WP_116306293.1	flagellar hook-associated protein FlgK	-
J9319_RS17020 (J9319_17020)	-	3250848..3251330 (-)	483	WP_007499977.1	flagellar protein FlgN	-
J9319_RS17025 (J9319_17025)	flgM	3251349..3251612 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
J9319_RS17030 (J9319_17030)	-	3251692..3252111 (-)	420	WP_210552221.1	TIGR03826 family flagellar region protein	-
J9319_RS17035 (J9319_17035)	comFC	3252168..3252854 (-)	687	WP_189337174.1	ComF family protein	Machinery gene
J9319_RS17040 (J9319_17040)	-	3252851..3253144 (-)	294	WP_035701582.1	competence protein ComFB	-
J9319_RS17045 (J9319_17045)	comFA	3253209..3254336 (-)	1128	WP_046344588.1	DEAD/DEAH box helicase	Machinery gene
J9319_RS17050 (J9319_17050)	-	3254708..3255550 (-)	843	WP_024719242.1	DegV family protein	-
J9319_RS17055 (J9319_17055)	degU	3255762..3256451 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
J9319_RS17060 (J9319_17060)	degS	3256516..3257691 (-)	1176	WP_035389673.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26131.63 Da
• Isoelectric Point: 10.1478

>NTDB_id=556397 J9319_RS17035 WP_189337174.1 3252168..3252854(-) (comFC) [Bacillus altitudinis strain 6ww6]
MICPICESHFVAAFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWNKRWDFAEILVMNRSVYA
YNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QSKQSKKRKNERLHQQNLFQLRQSNPIVLKDVVLIDDIYTTGATVYHAAKILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=556397 J9319_RS17035 WP_189337174.1 3252168..3252854(-) (comFC) [Bacillus altitudinis strain 6ww6]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCAGGATTGTTCAAGGTGGAATAAACGATGGGATTTTGCTGAGATTCTTGTGATGAATCGATCTGTTTATGCT
TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGAT
CGTTCTAAAGGATGTCGTATTAATCGATGACATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
AAGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (161-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.13	100	0.496
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus mitis NCTC 12261	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373