Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VPBB_RS13375 Genome accession   NC_019955
Coordinates   2908939..2910681 (-) Length   580 a.a.
NCBI ID   WP_024699327.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2903939..2915681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS13355 (VPBB_2600) - 2904621..2905460 (-) 840 WP_015297392.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  VPBB_RS13360 (VPBB_2601) - 2905530..2907047 (-) 1518 WP_015297393.1 AAA family ATPase -
  VPBB_RS13365 (VPBB_2602) aroB 2907100..2908200 (-) 1101 WP_015297394.1 3-dehydroquinate synthase -
  VPBB_RS13370 (VPBB_2603) aroK 2908232..2908750 (-) 519 WP_005381319.1 shikimate kinase AroK -
  VPBB_RS13375 (VPBB_2604) pilQ 2908939..2910681 (-) 1743 WP_024699327.1 type IV pilus secretin PilQ family protein Machinery gene
  VPBB_RS13380 (VPBB_2605) pilP 2910713..2911228 (-) 516 WP_015297395.1 pilus assembly protein PilP Machinery gene
  VPBB_RS13385 (VPBB_2606) pilO 2911218..2911811 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  VPBB_RS13390 (VPBB_2607) pilN 2911804..2912382 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  VPBB_RS13395 (VPBB_2608) pilM 2912366..2913382 (-) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 63579.71 Da        Isoelectric Point: 4.4560

>NTDB_id=55504 VPBB_RS13375 WP_024699327.1 2908939..2910681(-) (pilQ) [Vibrio parahaemolyticus BB22OP]
MKMRQGLTRTPRMLTGLFSLWLFLLLAPLAAAEDVQSNALKSIDFRTNKSKDAVIVVELASPAAIVDVKRVQEGLSIDLM
NTSVKDEQLYLLDVKDFATVVESVEVFRDTSTTRLVAYIDEEYTHDYRLTGRYLEITVSKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQKLTEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK
QVQIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVGIDDFLNVNLAATNPNAAS
IAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTPQIT
PDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS
YENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=55504 VPBB_RS13375 WP_024699327.1 2908939..2910681(-) (pilQ) [Vibrio parahaemolyticus BB22OP]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATGCTTACTGGGCTCTTCTCCTTATGGTTGTTTTTACTTCTAGC
CCCTTTAGCAGCAGCAGAAGATGTACAGTCTAATGCGCTCAAGAGCATCGACTTTCGCACTAACAAAAGCAAAGATGCCG
TGATTGTGGTGGAGCTTGCATCCCCGGCGGCTATTGTTGATGTTAAACGTGTTCAAGAAGGATTAAGCATTGATTTAATG
AACACGTCGGTAAAAGACGAACAGCTTTACCTTCTCGACGTGAAAGATTTCGCGACGGTGGTGGAAAGTGTGGAAGTGTT
CCGCGATACCTCCACCACACGATTAGTTGCGTATATCGATGAAGAATACACGCATGACTATCGTTTGACGGGGCGTTATC
TTGAAATCACTGTCAGCAAGCTTAAACCAAATGAAAAAGTGCCAGACAAGAGCATCTTAGAAAAAGAAGGCAAGCTGATT
TCGATTAACTTCCAAGACATTCCTGTGCGTAACGTTTTGCAGCTGATTGCAGATTACAACCAGTTTAACTTGGTGGTTTC
GGACTCTGTCGAAGGCAACCTTACACTGCGTCTTGATGGTGTGCCGTGGCAGCAAGTGCTCGACATCATCTTGCAAGTGA
AAGGGTTAGATAAGCGTGTTGATGGCAACGTGATTTTGGTCGCTCCGACCGATGAGCTGGATTTGCGCGAGAAGCAGCAG
TTAGAAAAACAAAAGCTGACGGAAGAAATGGGGGAACTTTCATCAGAAATCATCAAAGTCAATTTTGCTAAAGCTTCGGA
TATTGCAGAGATGATCAATGGTGAAGGCAATATTAGCATGTTGTCAGAGCGTGGCAGTATGACCATTGATGAGCGAACCA
ATTCGCTATTAATCAGAGAATTGCCAGAGAACATCGCCGTTATTCGCGAAATCATTGAATCGCTCGATATCCCAGTCAAA
CAAGTACAAATTGAAGCACGAATTGTGACCATCAGTGAAGGTAACATGGACGAGTTAGGTATTCGTTGGGGCTTCACATC
TATTAATGGTAATAACACCGTTGGTGGCTCTATTGAGAACAACCTAGCGACAATCGGTTTGTACGAAGGTGGTGGTGATG
GCGAAGGTGAAGAGGGTGGTGTTGGTATCGATGATTTTCTTAATGTGAATTTAGCCGCGACCAACCCGAATGCGGCGAGC
ATTGCGTTCCAAGTGGCAAAGTTAGGTTCTGATACATTATTGGACTTAGAGCTGTCTGCATTGCAGCAAGAATCAAAAGC
AGAAATCATTTCGAGCCCACGATTGATCACGACCAATAAGAAGCCCGCGTACATTGAACAAGGTACCGAAATTCCTTATC
TAGAATCTTCATCGAGTGGTGCAACGTCAGTGACCTTTAAAAAAGCGGTGTTGAGCTTGAAGGTGACACCGCAGATCACA
CCTGACAATCGTTTAGTGTTGGATCTGAGTGTGACCCAAGACCGACCTGGTAAGGTAGTGAAAACGGGCACAGGAGAGGC
AATGGCAATTGATACGCAGCGCATTGGTACCCAAGTTCTGGTGAATAATGGTGAGACGGTTGTGCTCGGTGGTATTTTTC
AGCACAGCATTACTAACTCAGTGGATAAAGTGCCATTGTTGGGCGATCTTCCGCTATTAGGCGCACTTTTCCGCCGAAGT
TACGAAAACGTTGGCAAAAGTGAGTTGCTAATTTTCGTTACGCCTAAGGTCGTTATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(420-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

92.241

100

0.922
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.855

97.586

0.75
  pilQ Vibrio cholerae strain A1552

76.855

97.586

0.75
  pilQ Legionella pneumophila strain Lp02

41.166

94.655

0.39
  pilQ Legionella pneumophila strain ERS1305867

41.166

94.655

0.39
  pilQ Pseudomonas aeruginosa PAK

39.336

98.621

0.388
  comQ Acinetobacter baylyi ADP1

38.382

100

0.384
  pilQ Acinetobacter baumannii D1279779

37.037

100

0.379
  pilQ Acinetobacter baumannii strain A118

37.037

100

0.379

Multiple sequence alignment