Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J5Z55_RS21140 Genome accession   NZ_CP072473
Coordinates   4079018..4080256 (-) Length   412 a.a.
NCBI ID   WP_209150618.1    Uniprot ID   -
Organism   Priestia aryabhattai strain LAD     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4074018..4085256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z55_RS21120 (J5Z55_21120) spoVS 4074578..4074838 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  J5Z55_RS21125 (J5Z55_21125) - 4075062..4075859 (-) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  J5Z55_RS21130 (J5Z55_21130) rny 4075941..4077500 (-) 1560 WP_013058803.1 ribonuclease Y -
  J5Z55_RS21135 (J5Z55_21135) recA 4077781..4078818 (-) 1038 WP_195782030.1 recombinase RecA Machinery gene
  J5Z55_RS21140 (J5Z55_21140) cinA 4079018..4080256 (-) 1239 WP_209150618.1 competence/damage-inducible protein A Machinery gene
  J5Z55_RS21145 (J5Z55_21145) pgsA 4080276..4080860 (-) 585 WP_195782028.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J5Z55_RS21150 (J5Z55_21150) - 4081005..4082003 (-) 999 WP_245210630.1 helix-turn-helix domain-containing protein -
  J5Z55_RS21155 (J5Z55_21155) - 4082016..4082807 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  J5Z55_RS21160 (J5Z55_21160) - 4083021..4083281 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  J5Z55_RS21165 (J5Z55_21165) - 4083347..4084072 (-) 726 WP_209150620.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44827.84 Da        Isoelectric Point: 5.0876

>NTDB_id=553668 J5Z55_RS21140 WP_209150618.1 4079018..4080256(-) (cinA) [Priestia aryabhattai strain LAD]
MNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKET
IASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPMY
ESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEVE
KTISERVGEYLYGYETTSLHNELVKELKAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSEH
TLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVHIGVAYKDQTPQVYSLQLSGSRQGIRSRTVN
YGCHYVLKTIKK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=553668 J5Z55_RS21140 WP_209150618.1 4079018..4080256(-) (cinA) [Priestia aryabhattai strain LAD]
ATGAACGCTGAAATTATTGGAGTCGGTTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATCGAA
AAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGATTG
CTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAAACA
ATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTCAAA
TCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTGGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAATGG
CTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTTCCGGGGCCGCCAAAAGAGCTCTATCCAATGTAT
GAATCATATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTTCGG
AATAGGGGAATCACAGCTTGAAACTGAGATTGAAGATTTGCTTGATGCGCAAACAAACCCGACGATTGCGCCGCTTGCAG
GGGATGGAGAAGTAACGCTCCGCTTAACTGCCAAGCATGCTGATGCCGCTGAAGCACAGCGCATGTTAGACGAAGTGGAA
AAAACCATTTCAGAGCGCGTAGGCGAGTATTTGTATGGCTATGAAACAACTTCTTTACATAATGAATTGGTGAAAGAATT
GAAGGCACAAGGATTAACGATTGCTTCGGCTGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTCTAACAACTGTTTCAG
GTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAACAC
ACGCTGAATCAGTACGGAGCCGTTAGCGAGCAATGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAACGGA
TATTGGCATCGGTTTTACAGGTGTAGCTGGACCCTCAAAGCAAGAAGGACATCCTGTAGGAACAGTGCATATAGGGGTCG
CTTATAAGGATCAAACTCCTCAAGTTTACAGCTTACAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTTAAT
TACGGCTGTCATTACGTATTAAAGACGATAAAGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.756

99.515

0.595
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.481
  cinA Streptococcus mitis SK321

46.667

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.429

100

0.473
  cinA Streptococcus pneumoniae Rx1

45.952

100

0.468
  cinA Streptococcus pneumoniae R6

45.952

100

0.468
  cinA Streptococcus pneumoniae D39

45.714

100

0.466
  cinA Streptococcus mutans UA159

44.928

100

0.451