Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   J7U23_RS09800 Genome accession   NZ_CP072435
Coordinates   1893636..1894871 (+) Length   411 a.a.
NCBI ID   WP_372589919.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1888636..1899871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS09770 (J7U23_09695) - 1889102..1891708 (+) 2607 WP_179971113.1 YfhO family protein -
  J7U23_RS09790 (J7U23_09715) - 1892253..1892936 (-) 684 WP_164178359.1 YoaK family protein -
  J7U23_RS09795 (J7U23_09720) rlmH 1892952..1893431 (-) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  J7U23_RS09800 (J7U23_09725) htrA 1893636..1894871 (+) 1236 WP_372589919.1 S1C family serine protease Regulator
  J7U23_RS09805 (J7U23_09730) spo0J 1894937..1895704 (+) 768 WP_180477211.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42844.11 Da        Isoelectric Point: 4.7654

>NTDB_id=552954 J7U23_RS09800 WP_372589919.1 1893636..1894871(+) (htrA) [Streptococcus thermophilus strain S24736]
MKKFNWKKIVAPIAILIIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTAKTVYTNITDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYGRIFGGGNSSDSSQENSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKLSSDKITTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRSALGISIADLNSLS
SSATSKLDLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKISSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTVDL
KLTKSTEDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=552954 J7U23_RS09800 WP_372589919.1 1893636..1894871(+) (htrA) [Streptococcus thermophilus strain S24736]
ATGAAAAAATTTAACTGGAAGAAAATAGTCGCGCCAATTGCAATACTAATTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGGGTATCTTTTACCAATACAACAGATACTGGAGTAAAAACGGCTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTAAATGACCTTTATGGCCGTATCTTTGGCGGAGGGAACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGTCTACAGGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGCAAAGAAGCCTACATCGTAA
CCAATAACCATGTTGTCGATGGGGCTAAAAAACTTGAAATCATGCTTTCGGATGGTTCGAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAATTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTTGGTGAAAAAGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATCGTTTCTAGCCTTAGCCGTACTATAACGATGCAAAACGATAATGGTGAAACTGTATCAACAAACGCTATCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTGCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAATTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTGCTGTTGAAGGTATGGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGATCAGCACTAGGGATCTCAATAGCAGATCTTAATAGCCTTTCT
AGCAGCGCAACTTCTAAATTAGATTTACCAGATGAGGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATTGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGTAGATCTT
AAATTAACAAAATCTACAGAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.611

100

0.596

  htrA Streptococcus gordonii str. Challis substr. CH1

56.553

100

0.567

  htrA Streptococcus mitis NCTC 12261

53.056

99.513

0.528

  htrA Streptococcus pneumoniae TIGR4

52.812

99.513

0.526

  htrA Streptococcus pneumoniae D39

52.812

99.513

0.526

  htrA Streptococcus pneumoniae Rx1

52.812

99.513

0.526

  htrA Streptococcus pneumoniae R6

52.812

99.513

0.526