Detailed information NTG0552890

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: J7T96_RS08900
• Genome accession: NZ_CP072434
• Coordinates: 1703211..1704311 (-)
• Length: 366 a.a.
• NCBI ID: WP_207559852.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24742
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1698211..1709311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7T96_RS08860 (J7T96_08715)	-	1698823..1699020 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
J7T96_RS08865 (J7T96_08720)	-	1699269..1700462 (-)	1194	WP_084831204.1	acetate kinase	-
J7T96_RS08870 (J7T96_08725)	comYH	1700518..1701474 (-)	957	WP_207559851.1	class I SAM-dependent methyltransferase	Machinery gene
J7T96_RS08875 (J7T96_08730)	comGG	1701519..1701836 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
J7T96_RS08880 (J7T96_08735)	comYF	1701814..1702251 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7T96_RS08885 (J7T96_08740)	comGE	1702235..1702528 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7T96_RS08890 (J7T96_08745)	comYD	1702500..1702928 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7T96_RS08895 (J7T96_08750)	comYC	1702888..1703214 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7T96_RS08900 (J7T96_08755)	comYB	1703211..1704311 (-)	1101	WP_207559852.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7T96_RS08905 (J7T96_08760)	comGA/cglA/cilD	1704193..1705134 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
J7T96_RS08910 (J7T96_08765)	-	1705215..1705577 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41885.04 Da
• Isoelectric Point: 10.1377

>NTDB_id=552890 J7T96_RS08900 WP_207559852.1 1703211..1704311(-) (comYB) [Streptococcus thermophilus strain S24742]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRHSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=552890 J7T96_RS08900 WP_207559852.1 1703211..1704311(-) (comYB) [Streptococcus thermophilus strain S24742]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCCCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACATTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	50.877	93.443	0.475
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413