Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7T96_RS08870 Genome accession   NZ_CP072434
Coordinates   1700518..1701474 (-) Length   318 a.a.
NCBI ID   WP_207559851.1    Uniprot ID   A0A3G6JLL9
Organism   Streptococcus thermophilus strain S24742     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1695518..1706474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T96_RS08840 (J7T96_08695) - 1695548..1696804 (+) 1257 WP_011681055.1 ISL3-like element ISSth1 family transposase -
  J7T96_RS08845 (J7T96_08700) - 1696880..1697542 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  J7T96_RS08850 (J7T96_08705) - 1697639..1698082 (-) 444 WP_084829882.1 CAAX protease -
  J7T96_RS08855 - 1698156..1698581 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  J7T96_RS08860 (J7T96_08715) - 1698823..1699020 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7T96_RS08865 (J7T96_08720) - 1699269..1700462 (-) 1194 WP_084831204.1 acetate kinase -
  J7T96_RS08870 (J7T96_08725) comYH 1700518..1701474 (-) 957 WP_207559851.1 class I SAM-dependent methyltransferase Machinery gene
  J7T96_RS08875 (J7T96_08730) comGG 1701519..1701836 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  J7T96_RS08880 (J7T96_08735) comYF 1701814..1702251 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7T96_RS08885 (J7T96_08740) comGE 1702235..1702528 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7T96_RS08890 (J7T96_08745) comYD 1702500..1702928 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7T96_RS08895 (J7T96_08750) comYC 1702888..1703214 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7T96_RS08900 (J7T96_08755) comYB 1703211..1704311 (-) 1101 WP_207559852.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7T96_RS08905 (J7T96_08760) comGA/cglA/cilD 1704193..1705134 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  J7T96_RS08910 (J7T96_08765) - 1705215..1705577 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35854.99 Da        Isoelectric Point: 4.7123

>NTDB_id=552886 J7T96_RS08870 WP_207559851.1 1700518..1701474(-) (comYH) [Streptococcus thermophilus strain S24742]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDPLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=552886 J7T96_RS08870 WP_207559851.1 1700518..1701474(-) (comYH) [Streptococcus thermophilus strain S24742]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCCGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6JLL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.206

99.057

0.686
  comYH Streptococcus mutans UA140

69.206

99.057

0.686