Detailed information NTG0552730

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: J7U00_RS01025
• Genome accession: NZ_CP072431
• Coordinates: 182624..183052 (+)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24745
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 177624..188052

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U00_RS01005 (J7U00_01020)	-	179975..180337 (+)	363	WP_014608746.1	DUF1033 family protein	-
J7U00_RS01010 (J7U00_01025)	comGA/cglA/cilD	180418..181359 (+)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U00_RS01015 (J7U00_01030)	comYB	181241..182341 (+)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U00_RS01020 (J7U00_01035)	comYC	182338..182664 (+)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U00_RS01025 (J7U00_01040)	comYD	182624..183052 (+)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U00_RS01030 (J7U00_01045)	comGE	183024..183317 (+)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U00_RS01035 (J7U00_01050)	comYF	183301..183738 (+)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U00_RS01040 (J7U00_01055)	comGG	183716..184033 (+)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
J7U00_RS01045 (J7U00_01060)	comYH	184078..185034 (+)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
J7U00_RS01050 (J7U00_01065)	-	185090..186283 (+)	1194	WP_014608740.1	acetate kinase	-
J7U00_RS01055 (J7U00_01070)	-	186532..186729 (+)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
J7U00_RS01060	-	186741..187016 (+)	276	WP_011681681.1	hypothetical protein	-
J7U00_RS01065	-	187060..187398 (+)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
J7U00_RS01070 (J7U00_01080)	-	187472..187915 (+)	444	WP_011681680.1	hypothetical protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=552730 J7U00_RS01025 WP_011226626.1 182624..183052(+) (comYD) [Streptococcus thermophilus strain S24745]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=552730 J7U00_RS01025 WP_011226626.1 182624..183052(+) (comYD) [Streptococcus thermophilus strain S24745]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38