Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   J6598_RS17215 Genome accession   NZ_CP072325
Coordinates   3735869..3736189 (+) Length   106 a.a.
NCBI ID   WP_144713692.1    Uniprot ID   -
Organism   Aeromonas veronii strain 183026     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3730869..3741189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6598_RS17200 (J6598_17220) yfbV 3731308..3731748 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  J6598_RS17205 (J6598_17225) - 3732053..3733255 (+) 1203 WP_040065015.1 acetate kinase -
  J6598_RS17210 (J6598_17230) pta 3733310..3735490 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  J6598_RS17215 (J6598_17235) comE1/comEA 3735869..3736189 (+) 321 WP_144713692.1 ComEA family DNA-binding protein Machinery gene
  J6598_RS17220 (J6598_17240) galU 3736286..3737197 (+) 912 WP_111900684.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J6598_RS17225 (J6598_17245) - 3737411..3738808 (+) 1398 WP_245095035.1 peptide MFS transporter -
  J6598_RS17230 (J6598_17250) - 3738930..3739892 (+) 963 WP_245095038.1 IS1595 family transposase -
  J6598_RS17235 (J6598_17255) - 3739923..3740894 (-) 972 WP_201906618.1 response regulator -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11286.27 Da        Isoelectric Point: 9.6564

>NTDB_id=551974 J6598_RS17215 WP_144713692.1 3735869..3736189(+) (comE1/comEA) [Aeromonas veronii strain 183026]
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKQTTTAEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=551974 J6598_RS17215 WP_144713692.1 3735869..3736189(+) (comE1/comEA) [Aeromonas veronii strain 183026]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGACCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGTTGGAAGCCAACAGGGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

49.107

100

0.519
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368