Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | CRI9333_RS07095 | Genome accession | NC_019753 |
| Coordinates | 1666295..1666660 (-) | Length | 121 a.a. |
| NCBI ID | WP_015202484.1 | Uniprot ID | K9VW82 |
| Organism | Crinalium epipsammum PCC 9333 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1661295..1671660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRI9333_RS07080 (Cri9333_1467) | - | 1662584..1663138 (+) | 555 | WP_015202481.1 | general stress protein | - |
| CRI9333_RS07085 (Cri9333_1468) | - | 1663245..1664846 (+) | 1602 | WP_015202482.1 | Hsp70 family protein | - |
| CRI9333_RS07090 (Cri9333_1469) | thrB | 1665020..1665973 (+) | 954 | WP_015202483.1 | homoserine kinase | - |
| CRI9333_RS07095 (Cri9333_1470) | pilH | 1666295..1666660 (-) | 366 | WP_015202484.1 | response regulator transcription factor | Machinery gene |
| CRI9333_RS07100 (Cri9333_1471) | - | 1666876..1667244 (-) | 369 | WP_015202485.1 | translation initiation factor | - |
| CRI9333_RS07105 (Cri9333_1472) | trpB | 1667474..1668724 (+) | 1251 | WP_015202486.1 | tryptophan synthase subunit beta | - |
| CRI9333_RS07110 (Cri9333_1473) | - | 1668912..1669292 (+) | 381 | WP_015202487.1 | CAP domain-containing protein | - |
| CRI9333_RS07115 (Cri9333_1474) | - | 1669298..1669927 (+) | 630 | WP_015202488.1 | ribonuclease H-like domain-containing protein | - |
| CRI9333_RS07120 (Cri9333_1475) | - | 1670056..1670334 (+) | 279 | WP_051035352.1 | L,D-transpeptidase | - |
| CRI9333_RS07125 (Cri9333_1476) | - | 1670543..1671256 (+) | 714 | WP_015202489.1 | DUF2786 domain-containing protein | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13630.79 Da Isoelectric Point: 5.8828
>NTDB_id=54957 CRI9333_RS07095 WP_015202484.1 1666295..1666660(-) (pilH) [Crinalium epipsammum PCC 9333]
MSTVLVVEDSATQRAMISELLQEKGLTVTVAKDGVEALEQMQGNNPDLVLLDIVMPRMNGYEFCRRIKSDPQTQNVPVVM
CSAKGEEFDRYWGMKQGADAYISKPFHPKELLGTVKQLLRR
MSTVLVVEDSATQRAMISELLQEKGLTVTVAKDGVEALEQMQGNNPDLVLLDIVMPRMNGYEFCRRIKSDPQTQNVPVVM
CSAKGEEFDRYWGMKQGADAYISKPFHPKELLGTVKQLLRR
Nucleotide
Download Length: 366 bp
>NTDB_id=54957 CRI9333_RS07095 WP_015202484.1 1666295..1666660(-) (pilH) [Crinalium epipsammum PCC 9333]
ATGAGTACAGTTTTAGTTGTAGAAGACAGTGCAACACAAAGGGCAATGATTTCAGAGCTTCTTCAAGAGAAAGGACTCAC
TGTTACAGTTGCCAAAGATGGAGTCGAAGCATTAGAACAAATGCAGGGAAATAACCCTGATTTAGTACTTCTGGACATTG
TGATGCCCCGGATGAACGGCTATGAATTCTGCCGTCGAATTAAATCTGATCCTCAAACCCAGAATGTACCTGTAGTCATG
TGTTCTGCTAAGGGAGAAGAGTTTGATCGTTACTGGGGTATGAAACAAGGTGCAGATGCCTACATTTCAAAACCTTTTCA
CCCTAAAGAATTATTAGGAACTGTCAAACAACTACTTAGAAGGTAG
ATGAGTACAGTTTTAGTTGTAGAAGACAGTGCAACACAAAGGGCAATGATTTCAGAGCTTCTTCAAGAGAAAGGACTCAC
TGTTACAGTTGCCAAAGATGGAGTCGAAGCATTAGAACAAATGCAGGGAAATAACCCTGATTTAGTACTTCTGGACATTG
TGATGCCCCGGATGAACGGCTATGAATTCTGCCGTCGAATTAAATCTGATCCTCAAACCCAGAATGTACCTGTAGTCATG
TGTTCTGCTAAGGGAGAAGAGTTTGATCGTTACTGGGGTATGAAACAAGGTGCAGATGCCTACATTTCAAAACCTTTTCA
CCCTAAAGAATTATTAGGAACTGTCAAACAACTACTTAGAAGGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
72.5 |
99.174 |
0.719 |
| pilG | Acinetobacter baumannii strain A118 |
43.86 |
94.215 |
0.413 |
| micA | Streptococcus pneumoniae Cp1015 |
39.669 |
100 |
0.397 |
| vicR | Streptococcus mutans UA159 |
38.843 |
100 |
0.388 |
| chpA | Acinetobacter baumannii strain A118 |
39.655 |
95.868 |
0.38 |
| pilL-C | Synechocystis sp. PCC 6803 |
36.667 |
99.174 |
0.364 |