Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   STA7437_RS17455 Genome accession   NC_019748
Coordinates   4010135..4010500 (+) Length   121 a.a.
NCBI ID   WP_015194713.1    Uniprot ID   K9XY69
Organism   Stanieria cyanosphaera PCC 7437     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4005135..4015500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STA7437_RS17445 (Sta7437_3551) hmpF 4006601..4008337 (-) 1737 WP_015194711.1 pilus motility taxis protein HmpF -
  STA7437_RS17450 (Sta7437_3552) - 4008717..4009946 (+) 1230 WP_015194712.1 response regulator -
  STA7437_RS17455 (Sta7437_3553) pilH 4010135..4010500 (+) 366 WP_015194713.1 PleD family two-component system response regulator Machinery gene
  STA7437_RS17460 (Sta7437_3554) - 4010562..4011092 (+) 531 WP_015194714.1 chemotaxis protein CheW -
  STA7437_RS17465 (Sta7437_3555) - 4011247..4013910 (+) 2664 WP_015194715.1 methyl-accepting chemotaxis protein -
  STA7437_RS17470 (Sta7437_3556) - 4013964..4014878 (+) 915 WP_015194716.1 ABC transporter permease -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13513.91 Da        Isoelectric Point: 6.9267

>NTDB_id=54934 STA7437_RS17455 WP_015194713.1 4010135..4010500(+) (pilH) [Stanieria cyanosphaera PCC 7437]
MSKVLIVEDSLAQRQMISDLLKGSGLKVVVACDGVEALEHLEKFSPDLVVMDIVMPRMNGYELCRRLKADPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPVELIGTVKQLLRA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54934 STA7437_RS17455 WP_015194713.1 4010135..4010500(+) (pilH) [Stanieria cyanosphaera PCC 7437]
ATGAGTAAAGTTCTGATTGTAGAAGATAGCTTGGCGCAAAGACAAATGATTTCGGATCTACTTAAAGGTAGTGGACTGAA
AGTTGTAGTAGCTTGTGATGGGGTTGAGGCATTAGAGCATCTAGAAAAATTTAGTCCAGATCTAGTAGTGATGGATATTG
TGATGCCCCGCATGAATGGTTATGAATTGTGTCGAAGGCTAAAAGCTGATCCCAAAACCCAAAATGTTCCTGTGGTAATG
TGTTCTTCTAAGGGAGAAGAGTTTGACCGCTATTGGGGCATGAAACAGGGAGCAGATGCTTATATTGCTAAACCTTTTCA
ACCTGTAGAGTTAATTGGTACAGTCAAACAGCTTTTGAGGGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9XY69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.667

99.174

0.76
  micA Streptococcus pneumoniae Cp1015

41.129

100

0.421
  chpA Acinetobacter baumannii strain A118

39.831

97.521

0.388
  pilG Acinetobacter baumannii strain A118

40

95.041

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

38.462

96.694

0.372

Multiple sequence alignment