Detailed information NTG0549059

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LTK15_RS03085
• Genome accession: NZ_CP089154
• Coordinates: 550260..551264 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005764.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain UNC_SaCF36
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 545260..556264

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTK15_RS03050 (LTK15_03050)	mreD	545799..546329 (+)	531	WP_001259927.1	rod shape-determining protein MreD	-
LTK15_RS03055 (LTK15_03055)	rplU	546565..546873 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
LTK15_RS03060 (LTK15_03060)	-	546879..547199 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
LTK15_RS03065 (LTK15_03065)	rpmA	547211..547495 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
LTK15_RS03070 (LTK15_03070)	obgE	547852..549144 (+)	1293	WP_000496098.1	GTPase ObgE	-
LTK15_RS03075 (LTK15_03075)	-	549157..549612 (+)	456	WP_000368902.1	ACT domain-containing protein	-
LTK15_RS03080 (LTK15_03080)	ruvA	549626..550228 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
LTK15_RS03085 (LTK15_03085)	ruvB	550260..551264 (+)	1005	WP_001005764.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LTK15_RS03090 (LTK15_03090)	queA	551266..552291 (+)	1026	WP_001019180.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LTK15_RS03095 (LTK15_03095)	tgt	552314..553453 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
LTK15_RS03100 (LTK15_03100)	yajC	553472..553732 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37703.98 Da
• Isoelectric Point: 5.0832

>NTDB_id=549059 LTK15_RS03085 WP_001005764.1 550260..551264(+) (ruvB) [Staphylococcus aureus strain UNC_SaCF36]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=549059 LTK15_RS03085 WP_001005764.1 550260..551264(+) (ruvB) [Staphylococcus aureus strain UNC_SaCF36]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAGAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTGGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTTGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGGCCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515