Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MIC7113_RS25480 Genome accession   NC_019738
Coordinates   6213321..6213686 (-) Length   121 a.a.
NCBI ID   WP_015185083.1    Uniprot ID   -
Organism   Allocoleopsis franciscana PCC 7113     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6208321..6218686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIC7113_RS25465 (Mic7113_5298) - 6208840..6209634 (-) 795 WP_015185080.1 MlaE family lipid ABC transporter permease subunit -
  MIC7113_RS25470 (Mic7113_5299) - 6209707..6212676 (-) 2970 WP_015185081.1 methyl-accepting chemotaxis protein -
  MIC7113_RS25475 (Mic7113_5300) - 6212770..6213300 (-) 531 WP_015185082.1 chemotaxis protein CheW -
  MIC7113_RS25480 (Mic7113_5301) pilH 6213321..6213686 (-) 366 WP_015185083.1 response regulator transcription factor Machinery gene
  MIC7113_RS25485 (Mic7113_5302) - 6213931..6215238 (-) 1308 WP_015185084.1 response regulator -
  MIC7113_RS25490 (Mic7113_5303) hmpF 6216244..6218007 (+) 1764 WP_015185085.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13331.44 Da        Isoelectric Point: 5.1594

>NTDB_id=54897 MIC7113_RS25480 WP_015185083.1 6213321..6213686(-) (pilH) [Allocoleopsis franciscana PCC 7113]
MSTVLVVEDSLAQRQMISDLLKGSGLTVTVASDGVEALEQIQRSSPDVVVLDIVMPRMNGYEVCRRLKADPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54897 MIC7113_RS25480 WP_015185083.1 6213321..6213686(-) (pilH) [Allocoleopsis franciscana PCC 7113]
ATGAGTACAGTTCTGGTTGTAGAAGACAGCCTTGCCCAACGACAGATGATCTCAGACCTCCTCAAAGGAAGTGGGTTGAC
GGTCACTGTAGCCAGCGATGGTGTAGAAGCATTGGAACAAATTCAGCGCTCTAGCCCTGACGTGGTGGTATTGGATATTG
TTATGCCTCGCATGAACGGTTACGAAGTGTGCCGCCGTCTGAAAGCCGACCCGAAAACTCAGAATGTTCCCGTCGTCATG
TGTTCTTCAAAAGGCGAAGAATTTGACCGCTATTGGGGCATGAAACAGGGTGCAGACGCTTACATTGCCAAGCCGTTCCA
ACCCACCGAGTTGATTGGAACGGTTAAACAGCTGCTTAGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.033

100

0.76
  micA Streptococcus pneumoniae Cp1015

40.323

100

0.413
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

36.667

99.174

0.364
  pilL-C Synechocystis sp. PCC 6803

36.667

99.174

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment