Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J4N38_RS04575 Genome accession   NZ_CP071857
Coordinates   1010742..1011041 (+) Length   99 a.a.
NCBI ID   WP_239867733.1    Uniprot ID   A0A9Q9CW85
Organism   Vibrio sp. SCSIO 43145     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1005742..1016041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N38_RS04560 (J4N38_04540) lon 1005749..1008100 (+) 2352 WP_239867727.1 endopeptidase La -
  J4N38_RS04565 (J4N38_04545) - 1008295..1008567 (+) 273 WP_004414742.1 HU family DNA-binding protein -
  J4N38_RS04570 (J4N38_04550) ppiD 1008741..1010600 (+) 1860 WP_252036134.1 peptidylprolyl isomerase -
  J4N38_RS04575 (J4N38_04555) comEA 1010742..1011041 (+) 300 WP_239867733.1 ComEA family DNA-binding protein Machinery gene
  J4N38_RS04580 (J4N38_04560) cmk 1011181..1011861 (+) 681 WP_252036135.1 (d)CMP kinase -
  J4N38_RS04585 (J4N38_04565) rpsA 1011965..1013635 (+) 1671 WP_239836826.1 30S ribosomal protein S1 -
  J4N38_RS04590 (J4N38_04570) ihfB 1013847..1014128 (+) 282 WP_239836825.1 integration host factor subunit beta -
  J4N38_RS04595 (J4N38_04575) - 1014266..1014547 (+) 282 WP_239836824.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  J4N38_RS04600 (J4N38_04580) lapB 1014573..1015742 (+) 1170 WP_239836823.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10745.52 Da        Isoelectric Point: 5.6566

>NTDB_id=548456 J4N38_RS04575 WP_239867733.1 1010742..1011041(+) (comEA) [Vibrio sp. SCSIO 43145]
MLHILWTCLLLTIAAYSPITISAEQPTHAEYSGIEITVNVNTAEAAELATLLSGIGEKKAQAIVLYRDENGPFLKVDDLT
LVKGIGPALIDKNRSRIKL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=548456 J4N38_RS04575 WP_239867733.1 1010742..1011041(+) (comEA) [Vibrio sp. SCSIO 43145]
ATGTTACATATACTATGGACTTGCTTATTATTGACAATCGCCGCATATAGTCCGATTACCATATCGGCTGAACAACCGAC
TCACGCTGAATACTCGGGAATAGAGATTACCGTGAATGTAAATACTGCTGAAGCGGCTGAATTGGCGACATTATTGAGTG
GTATTGGGGAGAAAAAAGCCCAGGCTATTGTTCTATATAGGGATGAAAATGGTCCTTTCTTGAAGGTGGATGATCTGACT
TTGGTAAAAGGTATCGGCCCCGCTTTAATAGATAAAAACCGCAGCCGAATAAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

54.545

100

0.545
  comEA Vibrio campbellii strain DS40M4

53.535

100

0.535
  comEA Vibrio cholerae C6706

59.524

84.848

0.505
  comEA Vibrio cholerae strain A1552

59.524

84.848

0.505
  comEA Acinetobacter baylyi ADP1

53.947

76.768

0.414
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60.606

0.364