Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J4N37_RS04495 Genome accession   NZ_CP071855
Coordinates   975106..975393 (+) Length   95 a.a.
NCBI ID   WP_029560945.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 970106..980393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS04485 (J4N37_04475) - 972619..972891 (+) 273 WP_010447007.1 HU family DNA-binding protein -
  J4N37_RS04490 (J4N37_04480) ppiD 973103..974962 (+) 1860 WP_252041760.1 peptidylprolyl isomerase -
  J4N37_RS04495 (J4N37_04485) comEA 975106..975393 (+) 288 WP_029560945.1 helix-hairpin-helix domain-containing protein Machinery gene
  J4N37_RS04500 (J4N37_04490) rrtA 975478..976029 (-) 552 WP_038887521.1 rhombosortase -
  J4N37_RS04505 (J4N37_04495) - 976033..976650 (+) 618 WP_010447014.1 DTW domain-containing protein -
  J4N37_RS04510 (J4N37_04500) - 976663..977997 (-) 1335 WP_050541114.1 anti-phage deoxyguanosine triphosphatase -
  J4N37_RS04515 (J4N37_04505) yfbR 978001..978585 (-) 585 WP_010447019.1 5'-deoxynucleotidase -
  J4N37_RS04520 (J4N37_04510) - 978700..979914 (-) 1215 WP_010447021.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10140.73 Da        Isoelectric Point: 7.1654

>NTDB_id=548406 J4N37_RS04495 WP_029560945.1 975106..975393(+) (comEA) [Vibrio sp. SCSIO 43153]
MKWILSVLLCVLAPVSHGVAAESNSKHEGIEITVNVNTASAEELATLLKGIGLKKANDIVEYRQENGPFKTAADLSNVKG
IGSATVEKNLQRILL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=548406 J4N37_RS04495 WP_029560945.1 975106..975393(+) (comEA) [Vibrio sp. SCSIO 43153]
ATGAAGTGGATTCTATCAGTACTGTTATGCGTGCTTGCACCAGTTAGCCATGGAGTCGCAGCTGAGAGCAACAGTAAACA
TGAAGGTATTGAAATTACGGTTAATGTAAATACAGCTTCGGCAGAGGAGTTAGCGACGCTGCTGAAAGGTATCGGGTTAA
AGAAAGCGAATGATATCGTTGAGTATCGCCAAGAGAACGGCCCATTTAAAACTGCGGCTGATTTGTCGAATGTTAAAGGT
ATAGGGTCAGCTACGGTTGAAAAGAATCTTCAGCGTATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

68.75

100

0.695
  comEA Vibrio campbellii strain DS40M4

66.316

100

0.663
  comEA Vibrio cholerae C6706

73.913

72.632

0.537
  comEA Vibrio cholerae strain A1552

73.913

72.632

0.537
  comE Neisseria gonorrhoeae MS11

42.857

88.421

0.379
  comE Neisseria gonorrhoeae MS11

42.857

88.421

0.379
  comE Neisseria gonorrhoeae MS11

42.857

88.421

0.379
  comE Neisseria gonorrhoeae MS11

42.857

88.421

0.379