Detailed information NTG0548256

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N41_RS13075
• Genome accession: NZ_CP071845
• Coordinates: 2798314..2799297 (-)
• Length: 327 a.a.
• NCBI ID: WP_239837826.1
• Uniprot ID: A0A9Q8XGC0
• Organism: Vibrio sp. SCSIO 43139
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2793314..2804297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N41_RS13050 (J4N41_12970)	rimM	2793429..2793977 (-)	549	WP_252035363.1	ribosome maturation factor RimM	-
J4N41_RS13055 (J4N41_12975)	rpsP	2794007..2794255 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
J4N41_RS13060 (J4N41_12980)	ffh	2794463..2795842 (-)	1380	WP_239876864.1	signal recognition particle protein	-
J4N41_RS13065 (J4N41_12985)	-	2796051..2796845 (+)	795	WP_239837824.1	inner membrane protein YpjD	-
J4N41_RS13070 (J4N41_12990)	-	2796968..2798242 (+)	1275	WP_252035364.1	CNNM domain-containing protein	-
J4N41_RS13075 (J4N41_12995)	rpoS	2798314..2799297 (-)	984	WP_239837826.1	RNA polymerase sigma factor RpoS	Regulator
J4N41_RS13080 (J4N41_13000)	nlpD	2799364..2800275 (-)	912	WP_252035365.1	murein hydrolase activator NlpD	-
J4N41_RS13085 (J4N41_13005)	-	2800278..2800904 (-)	627	WP_239865274.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N41_RS13090 (J4N41_13010)	surE	2800907..2801665 (-)	759	WP_252035366.1	5'/3'-nucleotidase SurE	-
J4N41_RS13095 (J4N41_13015)	truD	2801662..2802708 (-)	1047	WP_252035367.1	tRNA pseudouridine(13) synthase TruD	-
J4N41_RS13100 (J4N41_13020)	ispF	2802755..2803234 (-)	480	WP_252036649.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N41_RS13105 (J4N41_13025)	ispD	2803238..2803942 (-)	705	WP_239876863.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N41_RS13110 (J4N41_13030)	ftsB	2803945..2804223 (-)	279	WP_239865280.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37395.30 Da
• Isoelectric Point: 4.7232

>NTDB_id=548256 J4N41_RS13075 WP_239837826.1 2798314..2799297(-) (rpoS) [Vibrio sp. SCSIO 43139]
MSISNAATKVEEFELGPTMESIQASEQTTTNRTQSEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIASQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFSINEE

Nucleotide

• Length: 984 bp

>NTDB_id=548256 J4N41_RS13075 WP_239837826.1 2798314..2799297(-) (rpoS) [Vibrio sp. SCSIO 43139]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAGTTTGAGCTTGGACCTACAATGGAATCGATTCAAGCAAGCGAACA
GACTACTACCAACCGCACCCAATCTGAGGACGCCAAAGAGGAATTTGACGCTTCCACAAAGAGTCTGGATGCCACCCAAC
TTTACTTAGGGGAAATCGGTTTTTCTCCGCTACTCACCGCAGAAGAAGAAGTGTTGTACGCTCGCCGTGCCTTAAGAGGC
GACGAAGCTGCGCGTAAACGCATGATTGAAAGTAACCTTCGTCTAGTAGTAAAAATATCTCGTCGATATAGCAATCGTGG
TCTTGCCTTACTCGACTTAATCGAAGAGGGCAACCTTGGATTGATCCGAGCGGTTGAGAAGTTTGATCCTGAAAGAGGTT
TCCGATTTTCCACTTACGCCACATGGTGGATTCGTCAGACTATTGAACGCGCCCTGATGAATCAGACTCGTACCATTCGT
TTGCCAATTCATGTTGTCAAAGAACTCAATATTTATTTGCGTACTGCTCGAGAGCTATCACAAAAGCTTGACCATGAACC
AACGGCAGAAGAGATTGCATCACAGCTGGATAAGCCTGTTGACGATGTCAGTAAGATGCTACGCCTCAACGAACGCATTA
GCTCCGTTGATACACCGATTGGTGGTGATGGTGAGAAAGCGCTTCTGGACATTATTCCAGATGTAAATAACTCGGACCCA
GAAGTATCCACTCAAGATGATGATATTAAGTCTTCATTGATCCACTGGTTAGATGAGCTCAATCCGAAGCAGAAAGAAGT
ACTGGCTCGTCGATTTGGACTACTAGGGTATGAACCCTCTACCTTGGAAGAAGTGGGACGAGAAATCAATTTAACTCGTG
AACGCGTTCGCCAGATCCAAGTCGAAGGCTTACGCCGCTTGAGAGAGATCCTGATAAAACAGGGGCTGAATATGGAAAAT
CTATTCAGTATAAACGAAGAGTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85