Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   J4N43_RS01395 Genome accession   NZ_CP071842
Coordinates   295587..296219 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio sp. SCSIO 43009     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 290587..301219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS01380 (J4N43_01380) astA 291905..292924 (+) 1020 WP_158159509.1 arginine N-succinyltransferase -
  J4N43_RS01385 (J4N43_01385) astD 292953..294410 (+) 1458 WP_025768787.1 succinylglutamate-semialdehyde dehydrogenase -
  J4N43_RS01390 (J4N43_01390) - 294659..295450 (+) 792 WP_042523639.1 DUF1338 domain-containing protein -
  J4N43_RS01395 (J4N43_01395) crp 295587..296219 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  J4N43_RS01400 (J4N43_01400) - 296460..297329 (-) 870 WP_005381434.1 phosphoribulokinase -
  J4N43_RS01405 (J4N43_01405) - 297455..297667 (-) 213 WP_005382815.1 YheU family protein -
  J4N43_RS01410 (J4N43_01410) - 297701..298708 (-) 1008 WP_033907159.1 hydrolase -
  J4N43_RS01415 (J4N43_01415) - 298796..299284 (-) 489 WP_033907158.1 TIGR02444 family protein -
  J4N43_RS01420 (J4N43_01420) - 299281..301200 (-) 1920 WP_158159508.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=548185 J4N43_RS01395 WP_005381432.1 295587..296219(-) (crp) [Vibrio sp. SCSIO 43009]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=548185 J4N43_RS01395 WP_005381432.1 295587..296219(-) (crp) [Vibrio sp. SCSIO 43009]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAAACCATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471