Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J0X00_RS17165 Genome accession   NZ_CP071708
Coordinates   2375321..2375632 (+) Length   103 a.a.
NCBI ID   WP_136484253.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2370321..2380632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS17155 (J0X00_17135) - 2372864..2373136 (+) 273 WP_136484255.1 HU family DNA-binding protein -
  J0X00_RS17160 (J0X00_17140) ppiD 2373326..2375185 (+) 1860 WP_282477298.1 peptidylprolyl isomerase -
  J0X00_RS17165 (J0X00_17145) comEA 2375321..2375632 (+) 312 WP_136484253.1 ComEA family DNA-binding protein Machinery gene
  J0X00_RS17170 (J0X00_17150) cmk 2375924..2376604 (+) 681 WP_136484252.1 (d)CMP kinase -
  J0X00_RS17175 (J0X00_17155) rpsA 2376709..2378379 (+) 1671 WP_282477299.1 30S ribosomal protein S1 -
  J0X00_RS17180 (J0X00_17160) ihfB 2378613..2378897 (+) 285 WP_136484250.1 integration host factor subunit beta -
  J0X00_RS17185 (J0X00_17165) - 2379177..2379461 (+) 285 WP_136484249.1 lipopolysaccharide assembly protein LapA domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10831.46 Da        Isoelectric Point: 6.3012

>NTDB_id=547163 J0X00_RS17165 WP_136484253.1 2375321..2375632(+) (comEA) [Vibrio sp. ABG19]
MKLKSLLLSALLALSWPAANALAAAEENPVQAETSQGIEITVNVNSASAEEIATLLSGIGLKKAQAIVDYRQANGQFQTK
QDLTKVKGIGEATVAKNEARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=547163 J0X00_RS17165 WP_136484253.1 2375321..2375632(+) (comEA) [Vibrio sp. ABG19]
ATGAAACTTAAATCTTTACTGTTGTCTGCATTACTGGCGTTGAGCTGGCCTGCTGCAAATGCATTGGCTGCCGCAGAAGA
GAATCCGGTGCAAGCCGAAACGTCACAGGGTATCGAAATCACGGTGAATGTTAACTCAGCTTCTGCCGAAGAGATCGCGA
CGCTGTTGTCCGGGATAGGGCTGAAAAAAGCGCAAGCCATTGTTGATTACCGACAGGCTAACGGACAGTTCCAAACCAAG
CAGGATCTGACCAAGGTTAAGGGGATAGGGGAGGCCACCGTGGCGAAAAACGAAGCGCGCATTCTGCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

61.165

100

0.612
  comEA Vibrio cholerae strain A1552

61.165

100

0.612
  comEA Vibrio campbellii strain DS40M4

59.596

96.117

0.573
  comEA Vibrio parahaemolyticus RIMD 2210633

69.863

70.874

0.495
  comEA/comE1 Glaesserella parasuis strain SC1401

41.748

100

0.417
  comE1/comEA Haemophilus influenzae Rd KW20

34.783

100

0.388