Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H020_RS0108905 Genome accession   NZ_AKVY01000001
Coordinates   1707280..1708551 (+) Length   423 a.a.
NCBI ID   WP_001113214.1    Uniprot ID   A0A0H2URL5
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702280..1713551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0108870 - 1703341..1703769 (-) 429 WP_000418173.1 NUDIX hydrolase -
  H020_RS0108875 - 1703750..1704838 (-) 1089 WP_000719713.1 site-2 protease family protein -
  H020_RS0108880 - 1704857..1705327 (-) 471 WP_000257087.1 DUF3013 family protein -
  H020_RS0108885 - 1705618..1706070 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  H020_RS0108890 - 1706107..1706286 (-) 180 WP_001132284.1 type II toxin-antitoxin system HicA family toxin -
  H020_RS0108895 - 1706423..1706602 (-) 180 WP_001048906.1 hypothetical protein -
  H020_RS0108900 - 1706767..1706988 (-) 222 WP_000425689.1 hypothetical protein -
  H020_RS0108905 rarA 1707280..1708551 (+) 1272 WP_001113214.1 replication-associated recombination protein A Machinery gene
  H020_RS14785 - 1708971..1709078 (-) 108 Protein_1693 integrase -
  H020_RS0108915 - 1709108..1710364 (-) 1257 WP_000436400.1 ISL3 family transposase -
  H020_RS0108920 - 1710670..1711245 (-) 576 WP_000810872.1 hypothetical protein -
  H020_RS0108925 - 1711496..1711909 (-) 414 WP_000794284.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46999.46 Da        Isoelectric Point: 5.9471

>NTDB_id=54708 H020_RS0108905 WP_001113214.1 1707280..1708551(+) (rarA) [Streptococcus pneumoniae TIGR4]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=54708 H020_RS0108905 WP_001113214.1 1707280..1708551(+) (rarA) [Streptococcus pneumoniae TIGR4]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCTTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTACTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTAGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATCGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8G28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57

Multiple sequence alignment