Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CAL7507_RS10420 Genome accession   NC_019682
Coordinates   2394259..2394624 (+) Length   121 a.a.
NCBI ID   WP_015128432.1    Uniprot ID   K9PHH2
Organism   Calothrix sp. PCC 7507     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2389259..2399624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL7507_RS10405 (Cal7507_2175) tilS 2389473..2390543 (+) 1071 WP_015128429.1 tRNA lysidine(34) synthetase TilS -
  CAL7507_RS10410 (Cal7507_2176) hmpF 2390612..2392366 (-) 1755 WP_015128430.1 pilus motility taxis protein HmpF -
  CAL7507_RS10415 (Cal7507_2177) - 2392813..2394003 (+) 1191 WP_015128431.1 response regulator -
  CAL7507_RS10420 (Cal7507_2178) pilH 2394259..2394624 (+) 366 WP_015128432.1 response regulator transcription factor Machinery gene
  CAL7507_RS10425 (Cal7507_2179) - 2394634..2395164 (+) 531 WP_015128433.1 chemotaxis protein CheW -
  CAL7507_RS10430 (Cal7507_2180) - 2395181..2398111 (+) 2931 WP_015128434.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13380.51 Da        Isoelectric Point: 4.6926

>NTDB_id=54708 CAL7507_RS10420 WP_015128432.1 2394259..2394624(+) (pilH) [Calothrix sp. PCC 7507]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQIEPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54708 CAL7507_RS10420 WP_015128432.1 2394259..2394624(+) (pilH) [Calothrix sp. PCC 7507]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCTCAAAGGGAGATGATTACAGACCTCCTGAAGGCAAGTGGCTTAAC
TGTCACCCATGCCAGTGACGGAGTCGAAGCTTTGGAGGCCATTCAAATAGAACCTCCTGATCTAGTAGTCTTGGATATTG
TCATGCCCCGGATGAACGGTTACGAAGTTTGCCGTCGGTTAAAATCCGATCCTAAAACTCAAAATGTCCCCGTAGTGATG
TGTTCTTCTAAAGGTGAAGAATTTGATCGCTACTGGGGCATGAAGCAGGGTGCAGACGCTTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTACTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9PHH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.686

100

0.777
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment