Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3K87_RS04150 Genome accession   NZ_CP071698
Coordinates   903991..904515 (+) Length   174 a.a.
NCBI ID   WP_237593599.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain SC1810     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 898991..909515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3K87_RS04140 (J3K87_04115) - 900661..900873 (+) 213 WP_005597221.1 hypothetical protein -
  J3K87_RS04145 (J3K87_04120) uvrA 901012..903840 (-) 2829 WP_005607713.1 excinuclease ABC subunit UvrA -
  J3K87_RS04150 (J3K87_04125) ssb 903991..904515 (+) 525 WP_237593599.1 single-stranded DNA-binding protein Machinery gene
  J3K87_RS04155 (J3K87_04130) - 904679..905497 (-) 819 WP_012262961.1 GIY-YIG nuclease family protein -
  J3K87_RS04160 - 905573..905656 (+) 84 Protein_812 alcohol dehydrogenase -
  J3K87_RS04165 (J3K87_04135) - 905820..907811 (-) 1992 WP_237593600.1 DUF3732 domain-containing protein -
  J3K87_RS04170 (J3K87_04140) - 907808..908236 (-) 429 WP_252590632.1 three component ABC system middle component -
  J3K87_RS04175 (J3K87_04145) - 908233..909321 (-) 1089 WP_005618943.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19188.94 Da        Isoelectric Point: 4.8070

>NTDB_id=547078 J3K87_RS04150 WP_237593599.1 903991..904515(+) (ssb) [Actinobacillus pleuropneumoniae strain SC1810]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGDSGYGYDQTASRSAPQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=547078 J3K87_RS04150 WP_237593599.1 903991..904515(+) (ssb) [Actinobacillus pleuropneumoniae strain SC1810]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACGGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTATACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGTAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTATAACCAAGGTGACAGCGGTTACGGTTACGATCAAACAGCAAGTCGCTCTGCTCCACAAGCAGCGAAACCTGCTCAA
GCAGAACCACCAATGGATAACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.243

100

0.793
  ssb Vibrio cholerae strain A1552

59.322

100

0.603
  ssb Neisseria meningitidis MC58

47.399

99.425

0.471
  ssb Neisseria gonorrhoeae MS11

47.399

99.425

0.471
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.571

100

0.368
  ssb Latilactobacillus sakei subsp. sakei 23K

34.807

100

0.362