Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NOS7107_RS07975 Genome accession   NC_019676
Coordinates   1856592..1856957 (-) Length   121 a.a.
NCBI ID   WP_015112466.1    Uniprot ID   A0A2H6LK39
Organism   Nostoc sp. PCC 7107     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1851592..1861957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOS7107_RS07965 (Nos7107_1601) - 1853152..1856031 (-) 2880 WP_015112464.1 methyl-accepting chemotaxis protein -
  NOS7107_RS07970 (Nos7107_1602) - 1856048..1856578 (-) 531 WP_015112465.1 chemotaxis protein CheW -
  NOS7107_RS07975 (Nos7107_1603) pilH 1856592..1856957 (-) 366 WP_015112466.1 response regulator transcription factor Machinery gene
  NOS7107_RS07980 (Nos7107_1604) - 1857141..1858352 (-) 1212 WP_015112467.1 response regulator -
  NOS7107_RS07985 (Nos7107_1605) hmpF 1858761..1860518 (+) 1758 WP_015112468.1 pilus motility taxis protein HmpF -
  NOS7107_RS07990 (Nos7107_1606) tilS 1860549..1861532 (-) 984 WP_015112469.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13348.50 Da        Isoelectric Point: 4.6582

>NTDB_id=54658 NOS7107_RS07975 WP_015112466.1 1856592..1856957(-) (pilH) [Nostoc sp. PCC 7107]
MSTVLIVEDSLAQREMIIDLLKATGLTVTYASDGVEALEAIQSAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54658 NOS7107_RS07975 WP_015112466.1 1856592..1856957(-) (pilH) [Nostoc sp. PCC 7107]
ATGAGTACAGTTCTGATTGTGGAAGACAGTCTCGCACAAAGGGAGATGATTATTGACCTCCTGAAAGCCACTGGTTTAAC
AGTCACATACGCCAGTGACGGAGTAGAAGCGTTGGAGGCCATTCAGAGCGCTCCTCCAGACTTGGTGGTATTGGATATTG
TCATGCCACGGATGAACGGCTACGAAGTTTGCCGTCGGTTAAAATCTGACCCAAAAACCCAAAATGTCCCAGTAGTCATG
TGTTCTTCTAAAGGTGAAGAATTCGACCGCTACTGGGGGATGAAACAGGGTGCGGATGCTTATATAGCCAAACCGTTTCA
GCCGACGGAGTTGGTAGGAACAGTCAAACAACTCCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H6LK39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.686

100

0.777
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment