Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J1G47_RS00570 Genome accession   NZ_CP071487
Coordinates   107501..108628 (-) Length   375 a.a.
NCBI ID   WP_207326684.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 109488..120616 107501..108628 flank 860


Gene organization within MGE regions


Location: 107501..120616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS00570 (J1G47_00570) dprA 107501..108628 (-) 1128 WP_207326684.1 DNA-processing protein DprA Machinery gene
  J1G47_RS00575 (J1G47_00575) def 108964..109476 (+) 513 WP_005712670.1 peptide deformylase -
  J1G47_RS00580 (J1G47_00580) rfaD 109488..110414 (+) 927 WP_035525215.1 ADP-glyceromanno-heptose 6-epimerase -
  J1G47_RS00585 (J1G47_00585) - 110506..110649 (+) 144 WP_010787341.1 hypothetical protein -
  J1G47_RS00590 (J1G47_00590) - 110609..110914 (+) 306 WP_021110192.1 hypothetical protein -
  J1G47_RS00595 (J1G47_00595) - 111717..111875 (-) 159 WP_010787342.1 hypothetical protein -
  J1G47_RS00600 (J1G47_00600) - 112096..112491 (-) 396 WP_016527749.1 helix-turn-helix domain-containing protein -
  J1G47_RS00605 (J1G47_00605) - 112519..112788 (-) 270 WP_005713045.1 type II toxin-antitoxin system RelE/ParE family toxin -
  J1G47_RS00610 (J1G47_00610) - 113445..115631 (-) 2187 WP_207326685.1 DUF927 domain-containing protein -
  J1G47_RS00615 (J1G47_00615) - 115639..115902 (-) 264 Protein_123 Rha family transcriptional regulator -
  J1G47_RS00620 (J1G47_00620) - 116004..116417 (-) 414 WP_010787351.1 terminase small subunit -
  J1G47_RS00625 (J1G47_00625) - 116405..116755 (-) 351 WP_075592434.1 hypothetical protein -
  J1G47_RS00630 (J1G47_00630) - 116772..116978 (-) 207 WP_202115716.1 AlpA family transcriptional regulator -
  J1G47_RS00635 (J1G47_00635) - 117216..118424 (-) 1209 WP_016527735.1 IS256 family transposase -
  J1G47_RS00640 (J1G47_00640) - 118469..119149 (-) 681 WP_207326686.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41664.76 Da        Isoelectric Point: 5.8074

>NTDB_id=545571 J1G47_RS00570 WP_207326684.1 107501..108628(-) (dprA) [Glaesserella parasuis strain YHP1818]
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQRILTLF
DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKHQLAVTSGLAIGIDGFCHQRAAN
ENGITIAVLGSGLDQVYPARHKKLAEQIVETSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR
YALEQGREVFALPNSVQNPYSEGCHKLIKEGALLVENVEDILEAIAWQRQSVHIQPSLFDTKPKQAVKSAPKLAKKLPEL
TACQQQLFEQISLEPISIDDLAKATDMAVETALIELLSLELLGVVKQVSGGYIIT

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=545571 J1G47_RS00570 WP_207326684.1 107501..108628(-) (dprA) [Glaesserella parasuis strain YHP1818]
ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCGCAACGTATCGGGCGGTTACTCTCGGA
AGTGGACTTTGGCGAATTTTGTCAATATGACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT
GGTTTAATCCTGAGCATAAATGGATCGATCAGGCGTTGCAATGGGCGGAACAGGATCAGCAACGGATTTTAACTTTATTT
GACGAAGATTATCCTTTCTTGCTGAAGCAGATCAGCACCGCTCCTCCAGTGCTTTTTGTGCGGGGGAATGTTGAAAGTTT
ATCGTTACCGCAGATAGCCATCGTTGGCAGTCGAGATTATTCCCACTATGGCGAACACTGGGCTGGGCATTTTTCGGCGG
AATTAGTGAAACATCAACTTGCTGTCACTAGTGGTTTAGCCATAGGCATAGACGGATTTTGTCATCAGCGTGCGGCCAAT
GAAAACGGGATTACTATTGCGGTTTTAGGCAGTGGTTTAGACCAAGTTTACCCTGCTCGCCATAAAAAACTTGCTGAACA
AATCGTTGAAACAAGCGGTGCGTTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAGAATTTCCCTAGACGAA
ATCGTATTATCAGCGGATTATCGCTAGGCACATTGGTTATTGAAGCAACAGTGAATAGTGGTTCGCTCATCACTGCTCGT
TATGCGTTAGAGCAAGGACGAGAAGTTTTTGCATTGCCAAACTCAGTACAAAACCCGTATAGCGAAGGGTGCCATAAATT
GATTAAAGAAGGAGCATTACTGGTTGAAAATGTTGAAGATATTTTAGAAGCGATTGCGTGGCAACGGCAGTCAGTGCATA
TTCAACCAAGTCTATTTGATACGAAACCTAAACAAGCGGTGAAATCTGCCCCAAAATTGGCAAAAAAACTACCTGAACTG
ACCGCTTGTCAGCAACAACTGTTTGAACAGATTAGCCTTGAGCCGATCAGCATTGATGATCTTGCCAAAGCGACGGATAT
GGCGGTAGAAACCGCATTGATTGAGCTGTTGAGTTTGGAGTTGTTGGGCGTAGTGAAGCAGGTGAGTGGAGGCTATATAA
TCACTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)

DprA winged helix domain (DprA_WH)

(314-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

97.867

100

0.979
  dprA Haemophilus influenzae Rd KW20

53.116

89.867

0.477
  dprA Vibrio campbellii strain DS40M4

47.721

99.467

0.475
  dprA Vibrio cholerae strain A1552

44.947

100

0.451
  dprA Legionella pneumophila strain ERS1305867

39.418

100

0.397
  dprA Neisseria gonorrhoeae MS11

43.492

84

0.365
  dprA Neisseria gonorrhoeae strain FA1090

43.175

84

0.363