Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   DDR89_RS06810 Genome accession   NZ_CP071460
Coordinates   1317332..1317847 (-) Length   171 a.a.
NCBI ID   WP_052778359.1    Uniprot ID   A0A5T1DDV9
Organism   Campylobacter jejuni strain CAMSA2002     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312332..1322847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDR89_RS06795 (DDR89_06795) - 1312435..1314252 (-) 1818 WP_052800508.1 motility associated factor glycosyltransferase family protein -
  DDR89_RS06800 (DDR89_06800) - 1314249..1316081 (-) 1833 WP_207294288.1 motility associated factor glycosyltransferase family protein -
  DDR89_RS06805 (DDR89_06805) - 1316091..1317332 (-) 1242 WP_002864247.1 DUF2920 family protein -
  DDR89_RS06810 (DDR89_06810) ctsG 1317332..1317847 (-) 516 WP_052778359.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DDR89_RS06815 (DDR89_06815) tsaD 1317848..1318855 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DDR89_RS06820 (DDR89_06820) - 1318852..1320246 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  DDR89_RS06825 (DDR89_06825) dxr 1320248..1321318 (-) 1071 WP_042635905.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DDR89_RS06830 (DDR89_06830) cdsA 1321315..1322040 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  DDR89_RS06835 (DDR89_06835) - 1322049..1322387 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.58 Da        Isoelectric Point: 7.1352

>NTDB_id=545471 DDR89_RS06810 WP_052778359.1 1317332..1317847(-) (ctsG) [Campylobacter jejuni strain CAMSA2002]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKANFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=545471 DDR89_RS06810 WP_052778359.1 1317332..1317847(-) (ctsG) [Campylobacter jejuni strain CAMSA2002]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTAA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1DDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936