Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JZM60_RS07475 Genome accession   NZ_CP071382
Coordinates   1597731..1598174 (-) Length   147 a.a.
NCBI ID   WP_207165010.1    Uniprot ID   -
Organism   Geobacter benzoatilyticus strain Jerry-YX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1592731..1603174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM60_RS16850 - 1593920..1594177 (-) 258 WP_277603805.1 GSU3128 family (seleno)protein -
  JZM60_RS07460 (JZM60_07460) - 1594364..1594828 (+) 465 WP_207165003.1 MarR family winged helix-turn-helix transcriptional regulator -
  JZM60_RS07465 (JZM60_07465) - 1594828..1596774 (+) 1947 WP_207165005.1 FUSC family protein -
  JZM60_RS07470 (JZM60_07470) - 1596907..1597638 (+) 732 WP_207165007.1 SDR family oxidoreductase -
  JZM60_RS07475 (JZM60_07475) ssb 1597731..1598174 (-) 444 WP_207165010.1 single-stranded DNA-binding protein Machinery gene
  JZM60_RS07480 (JZM60_07480) - 1598317..1599021 (+) 705 WP_207165012.1 lysophospholipid acyltransferase family protein -
  JZM60_RS07485 (JZM60_07485) - 1599023..1599202 (+) 180 WP_207165014.1 hypothetical protein -
  JZM60_RS07490 (JZM60_07490) - 1599209..1599625 (+) 417 WP_207165016.1 tetratricopeptide repeat protein -
  JZM60_RS07495 (JZM60_07495) - 1599632..1601308 (+) 1677 WP_207165018.1 ribonuclease J -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16061.77 Da        Isoelectric Point: 5.3353

>NTDB_id=545122 JZM60_RS07475 WP_207165010.1 1597731..1598174(-) (ssb) [Geobacter benzoatilyticus strain Jerry-YX]
MASLNKVMLIGNLGKDPEVRYTTGGTAVASFSIATSEKFKNRNGEFEERTEWHNVVLWGRQAEIAGEYLAKGRTVYIEGR
LQTRKWQDKDGRDRWSTEVVGERMQMLGGKGEGGGGRSGGRGGQEGGFGGGPAYDEPAFNPDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=545122 JZM60_RS07475 WP_207165010.1 1597731..1598174(-) (ssb) [Geobacter benzoatilyticus strain Jerry-YX]
ATGGCGAGTCTCAACAAGGTAATGCTCATCGGCAATCTCGGGAAGGACCCCGAGGTCCGCTACACTACGGGCGGCACGGC
AGTGGCCAGCTTCTCCATCGCCACCAGCGAGAAATTCAAGAACAGGAACGGCGAGTTCGAAGAGAGGACCGAGTGGCACA
ACGTGGTCCTCTGGGGCCGCCAGGCGGAAATCGCCGGCGAATACCTGGCAAAAGGGCGGACCGTATACATTGAAGGACGG
CTCCAGACCCGCAAGTGGCAGGACAAGGACGGACGCGACCGCTGGTCCACCGAAGTGGTGGGTGAGCGGATGCAGATGCT
CGGCGGCAAGGGCGAGGGAGGCGGCGGGCGCTCCGGCGGCCGCGGCGGTCAGGAAGGCGGTTTCGGCGGCGGCCCGGCCT
ACGACGAGCCGGCCTTCAACCCCGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.605
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.537
  ssb Neisseria meningitidis MC58

51.351

100

0.517
  ssb Neisseria gonorrhoeae MS11

57.895

77.551

0.449
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.838

100

0.422
  ssb Latilactobacillus sakei subsp. sakei 23K

32.164

100

0.374