Detailed information NTG0054458

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: COA_RS0118790
• Genome accession: NZ_AKBV01000001
• Coordinates: 3892825..3893850 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3887825..3898850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COA_RS0118760	zapB	3887909..3888154 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
COA_RS0118765	rraA	3888239..3888724 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
COA_RS0118770	menA	3888817..3889743 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
COA_RS0118775	hslU	3889810..3891141 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
COA_RS0118780	hslV	3891151..3891681 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
COA_RS0118785	ftsN	3891774..3892733 (-)	960	WP_000068828.1	cell division protein FtsN	-
COA_RS0118790	cytR	3892825..3893850 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
COA_RS0118795	priA	3894006..3896204 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
COA_RS0118800	rpmE	3896407..3896619 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
COA_RS0118805	yiiX	3896680..3897288 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
COA_RS0118810	metJ	3897472..3897789 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=54458 COA_RS0118790 WP_000644904.1 3892825..3893850(-) (cytR) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=54458 COA_RS0118790 WP_000644904.1 3892825..3893850(-) (cytR) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628